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Detailed information on CNT30103640

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30696451	Oryza rufipogon	Oryza sativa	98.82	13.59	100	756	forward
CNT30193829	Oryza rufipogon	Secale cereale	100.39	49.23	90.62	768	forward
CNT30588877	Oryza rufipogon	Musa acuminata	34.25	95.97	83.21	262	reverse complement
CNT30510689	Oryza rufipogon	Solanum lycopersicum	17.78	23.69	86.03	136	forward
CNT30556045	Oryza rufipogon	Oryza glaberrima	98.82	23.16	99.87	756	forward
CNT30245953	Oryza rufipogon	Avena sativa	34.64	99.62	87.55	265	reverse complement
CNT3017916	Oryza rufipogon	Zea mays	98.82	36.66	92.72	756	forward
CNT30606803	Oryza rufipogon	Gossypium raimondii	17.78	48.06	87.5	136	forward
CNT30351181	Oryza rufipogon	Eragrostis tef	26.01	39.41	90.95	199	forward
CNT30596972	Oryza rufipogon	Oryza meridionalis	98.82	60.43	99.87	756	forward
CNT30369475	Oryza rufipogon	Oryza glumipatula	44.18	34.63	97.63	338	forward
CNT30574986	Oryza rufipogon	Oryza barthii	44.18	33.01	99.41	338	reverse complement
CNT30116311	Oryza rufipogon	Oryza nivara	49.02	100	100	375	forward
CNT30550879	Oryza rufipogon	Oryza brachyantha	24.05	45.89	99.46	184	reverse complement

Expression of CNT30103640

Peptides detected in this lncRNA

>peptide 1 (51 aa)
MLEENDSSKNFFVLNASYLEELATSTIFDGYRGIQSTNLMVVCYPNHSSQP*

Sequence

>CNT30103640
GAAATCTCTAGCCAACCTTCCCACAAGAGGTTTTTCTTAACACCAATGAATTCTATTAATGCTAGAGGAAAACGATAGCTCCAAGAATTTCTTTGTTCTC
AACGCCTCCTATTTAGAGGAATTAGCCACTTCAACGATCTTTGATGGTTATAGGGGTATCCAAAGTACAAACTTGATGGTTGTTTGTTATCCCAACCATT
CTTCCCAGCCCTGATACCAATCAGGAAAGGGTTAATTTCTAACAAAGTTTTTCTCTTGTTGATTCCTATTTCTAGGTGTAGTGCTTTTATCCCCTATGCT
ACCTATTAGTACTAGTAGAGTAGGATTAGCCTGTAATACAGAACCTATCCTGTAGGTGTAACCTTTCGCTCAATACTAAAATCTACAATTGAAGCATCCG
AGGCCGCGTCAGTCGAGGATACACGACAGAAGGAGTTGTTAGTTCACCTCACCTTCCCTAAGCGTGGGTTTCCCTTACTAATTTGGTTTTCTCTCCGCGA
ACCCCCACTCTTTCTCGTAAAACCGGGGTGTAGGTAGGGCTAAAAAAACAAAAAAAAGAGTCAAATCGCACCATCTCTATAATAAGTAAATGCCCTTTTT
TCCCCGGAGGTTGTCGGAATTATTCGCAATAAAATATTGGCTACAATTGAGAAGGTCTTATCAATGAAATTTCCATTTATACGGGATCTAGGCATAATTC
CCAACCCATTCTATCATTCTATATAGAATTCTTTTCATTCCTTCACAAAATAACATAAAAAAAAA