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Detailed information on CNT30574986


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6ENH3|YCF3_ORYNI, E-value = 2e-18

BLAST vs NONCODE:
NONORUT001147, E-value = 3e-117

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696451Oryza barthiiOryza sativa33.016.0799.41338reverse complement
CNT30193829Oryza barthiiSecale cereale33.6922.1288.41345reverse complement
CNT30556045Oryza barthiiOryza glaberrima33.0110.3699.7338reverse complement
CNT30245953Oryza barthiiAvena sativa18.7572.1888.54192forward
CNT3017916Oryza barthiiZea mays33.0116.3991.42338reverse complement
CNT30606803Oryza barthiiGossypium raimondii11.6242.0589.08119reverse complement
CNT30351181Oryza barthiiEragrostis tef12.725.7494.62130reverse complement
CNT30596972Oryza barthiiOryza meridionalis33.0127.0299.7338reverse complement
CNT30369475Oryza barthiiOryza glumipatula74.878.4898.56766reverse complement
CNT30106471Oryza barthiiOryza longistaminata27.3469.6592.14280reverse complement
CNT30103640Oryza barthiiOryza rufipogon33.0144.1899.41338reverse complement
CNT30116375Oryza barthiiOryza nivara12.2134.5399.2125forward

Expression of CNT30574986

Peptides detected in this lncRNA

>peptide 1 (68 aa)
MWSSSISFLDISYAKLVACSQSPNLATHAINMLQLCLVPYLAFPCQPVRPSQLQSDLTYINHPSACYK*

>peptide 2 (38 aa)
MVRFDSFFCFFSPTYTPVLRERAGVRGEKTKLVRETHA*

Sequence

>CNT30574986
GCAGTGACCAATGTGGTCAAGTTCAATTTCTTTCTTAGACATCTCTTATGCTAAACTGGTAGCCTGTTCACAATCTCCTAACCTTGCCACGCACGCAATT
AATATGTTGCAATTATGTTTGGTTCCATACCTTGCTTTTCCCTGTCAGCCAGTAAGGCCTTCGCAGCTTCAATCTGATCTAACTTACATTAACCATCCAT
CAGCATGTTATAAGTAACTACATCAGGCAAGAAGCCCTTCTTTTACTCCATTTCATAGAAGTACTTGAGAGCTGTCCCAAGTTCCCCACTTTGCAGAACC
CACAAATTAGAACATTCTATGCAAATAATCTGTTTTTCCAACCTTCCTTCCCCCATTTGGCCAAATAGATAAACTGGTTCCTCAAACTTCCCTTCTTTCC
ACAATCCATTCAGATTCAGCAGGGTGTGCTATATATAAATTCACTAGGCTTAACTCCCTTCTGTCTCATCTCACCTAGCTTCGTCTGCTTTCCCTTCCTT
ACAGACATTATTAGCGCCGTGTGTGTAACAACTTTGGGAACAATTCCAAGAGTGTTCAATCCCGTATAAATGGAAATTTCATTGATAAGACCTTCTCAAT
TGTAGCCAATATTTTATTGCGAATAATTCCGACAACCTCCGGGGAAAAAAGGGCATTTACTTATTATAGAGATGGTGCGATTTGACTCTTTTTTTTGTTT
TTTTAGCCCTACCTACACCCCGGTTTTACGAGAAAGAGCGGGGGTTCGCGGAGAGAAAACCAAATTAGTAAGGGAAACCCACGCTTAGGGAAGGTGAGGT
GAACTAACAACTCCTTCTGTCGTGTATCCTCGACTGATGCGGCCTCGGATGCTTCAATTGTAGATTTTAGTATTGAGCGAAAGGTTACACCTACAGTTTC
AAACTGTCATGTTTATTGCAAGATCAACTTGACCAGTTGGATAGAATCCTTTCACCAAAGCAGTTCGTGCTGCCAGCATGTCACCGTCGATGATATAGTA
GGACGTCGAGCGTGTCGGGCGAGG