Detailed information on CNT3018189


BLAST search results

BLAST vs Swiss-Prot:
sp|P49168|RR12_PINCO, E-value = 2e-17

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30730673Zea maysCorchorus capsularis69.428.0183.87186forward
CNT30504293Zea maysNicotiana attenuata51.875.587.05139forward
CNT30711983Zea maysGlycine max22.3913.029060forward
CNT30542072Zea maysBrassica napus5011.187.31134forward
CNT30235691Zea maysBrassica oleracea5020.8184.33134forward
CNT30556069Zea maysOryza glaberrima98.8887.4693.96265forward
CNT3060121Zea maysArabidopsis lyrata5013.7785.82134forward
CNT30452489Zea maysSaccharum spontaneum65.6731.8386.36176reverse complement
CNT30609565Zea maysGossypium raimondii70.5222.7484.66189forward
CNT3021978Zea maysPopulus trichocarpa44.7836.2581.67120reverse complement
CNT30103691Zea maysOryza rufipogon53.738.390.28144forward

Expression of CNT3018189

Peptides detected in this lncRNA

>peptide 1 (61 aa)
THDLNESHIHPSTCSSTLRTSLKRGRFSSISYWLSCISNKLFNRWHVVCIYKMDWFRSILT*

Sequence

>CNT3018189
AACTCATGATCTGAACGAGTCGCACATACACCCTAGCACATGTTCCTCGACGCTGAGGACATCCCTTAAGCGCGGCCGATTTTCTAGCATTTCGTATTGG
CTGTCTTGCATTTCTAATAAGTTGTTTAACCGTTGGCATGTCGTATGTATATATAAAATGGATTGGTTTAGATCGATCTTAACCTGATGATTCATCATCA
TGAAGTATTTCTATTTTCTATAGCATAAAACCCGAATTTAGGTTTGAGATAAATTTACAAGAAATCCA