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Detailed information on CNT30452489


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30556069Saccharum spontaneumOryza glaberrima31.156.7787.21172reverse complement
CNT3018189Saccharum spontaneumZea mays31.8365.6786.36176reverse complement

Expression of CNT30452489

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MQEPVQNASKSATFKGFLVEDHVLGCMYDLLRANGYS*

>peptide 2 (61 aa)
MGTIIFFRSGMVTQSSQNDHKGLCTRACLLRGLRILPSLGSDPRCRIFGRLGSDALPGSSG*

Sequence

>CNT30452489
AGCGTATAAAATTCCCTGACGCTAGGATTATACTTCACCAACCTACTATTGCTTCTTATCTGGCATGGGCACCATAATTTTTTTTAGAAGTGGAATGGTT
ACACAAAGTTCGCAAAATGATCACAAGGGTTTATGCACTAGGGCCTGTTTGCTTCGAGGACTGAGGATCTTGCCTAGCCTAGGCAGCGATCCCAGGTGTC
GGATTTTTGGACGCTTGGGGTCAGATGCGCTGCCTGGATCATCAGGTTAAAATTGATCTAAACCAATCCATTTTTTCTATATACATACAACATGCTAATG
GTTAAACAACTTATGAGAAATGCAAGAGCCAGTACAAAATGCTAGTAAATCGGCCACGTTCAAGGGATTCCTCGTTGAGGACCATGTGCTAGGGTGTATG
TACGACTTGCTCAGAGCAAATGGTTATTCATAATAGTAATAAAAATAAAAAGGTTTATGCTATTTATCTTAAAAGAACAAATTAAAGGGTCAGCTACTTA
GCTAACTTTCATAATGAATTTTAACTTATCCATTACATCACTCTGAACTATTT