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Detailed information on CNT30730673


BLAST search results

BLAST vs Swiss-Prot:
sp|P49168|RR12_PINCO, E-value = 3e-09

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30550041Corchorus capsularisIpomoea triloba45.1822.485300forward
CNT30401817Corchorus capsularisBeta vulgaris9.3425.4187.162forward
CNT30504293Corchorus capsularisNicotiana attenuata28.617.5289.47190forward
CNT30711983Corchorus capsularisGlycine max20.3329.2885.19135forward
CNT30542072Corchorus capsularisBrassica napus26.9614.8387.71179forward
CNT30235691Corchorus capsularisBrassica oleracea26.9627.886.59179forward
CNT30556069Corchorus capsularisOryza glaberrima20.9345.8784.89139forward
CNT3060121Corchorus capsularisArabidopsis lyrata26.6618.1987.57177forward
CNT30599240Corchorus capsularisFraxinus excelsior18.8330.1284125reverse complement
CNT3018189Corchorus capsularisZea mays28.0169.483.87186forward
CNT30609565Corchorus capsularisGossypium raimondii87.9570.2894.86584forward
CNT3021978Corchorus capsularisPopulus trichocarpa27.2654.6887.85181reverse complement

Expression of CNT30730673

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MFLGAEEHPRRAGDFVTFLIGCLAFLISCLIVGMLNHIHNRLV*

>peptide 2 (36 aa)
GNLYSSHYSALLINFPVIDLSRRDLSYTVTVFNYED*

Sequence

>CNT30730673
TGGTAACTTGTACAGTTCACACTATTCGGCTCTACTCATAAATTTTCCAGTAATAGATCTTTCACGACGAGATTTATCTTATACAGTAACGGTATTTAAT
TATGAGGATTAATTGGGTAGTTGACCCTGTTAGTCCGTTCTTTGCAAGAGTCGAAGCATAATCTTTTTGCTTTTTAAATAGTATTTTCCCCGCTTAATGG
ATAAGCATTTGCTACCAATGGGGAATTTTTTCTCATCTTAAATGCCAAGATTGGATTTGCGCCAATGGAAACCATAAATTTCATACACAATAGAAGGATA
TGGGAGATCTATCTTTTTAGATAGTGAACGGGGGAACCCTATTCTATTCACTGGTACTGATAGTTGATACTGAAAAAATTGTTTCTTTTTTCTCAGCCCA
TGATCTGAACAAGTCGCACATACACCCTAGTACATGTTCCTCGGCGCTGAGGAACATCCCCGAAGAGCAGGGGATTTCGTGACATTTTTAATTGGCTGTC
TTGCATTTCTAATAAGTTGTTTAATAGTTGGCATGCTGAATCATATACATAATAGATTGGTTTAGATGGATCCTAACCAGATGGTTAGTAATTATTTCAT
TAGAGGTAGAGGGCAAAGAGGTAGAGGGCAACCCTAAAACAAAGTGCACTATTTTTGTCCTAAA