Detailed information on CNT3021978


BLAST search results

BLAST vs Swiss-Prot:
sp|P49168|RR12_PINCO, E-value = 6e-12

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30730673Populus trichocarpaCorchorus capsularis54.6827.2687.85181reverse complement
CNT30200527Populus trichocarpaPisum sativum26.8921.8189.8989reverse complement
CNT30504293Populus trichocarpaNicotiana attenuata55.297.2488.52183reverse complement
CNT30711983Populus trichocarpaGlycine max35.9525.8187.39119reverse complement
CNT30542072Populus trichocarpaBrassica napus53.7814.7585.39178reverse complement
CNT30235691Populus trichocarpaBrassica oleracea53.7827.6483.15178reverse complement
CNT3060121Populus trichocarpaArabidopsis lyrata45.9215.6286.18152reverse complement
CNT3018189Populus trichocarpaZea mays36.2544.7881.67120reverse complement
CNT30609565Populus trichocarpaGossypium raimondii57.422.8690190reverse complement

Expression of CNT3021978

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MSPNPLLLGDALSAEGHVLGCMCGLFRFQIVGWDKRKNFSTIRDQYR*

>peptide 2 (74 aa)
MPSSKQLIRNTRQSIRNVTKSPALGGCPQCRGTCTRVYVRLVQISDCGLGQKKEFFHYPRSVPMNRIEWKTPLHY

Sequence

>CNT3021978
AAAACTTGATACTTAATTTTAATAAAATAGAATATGAATATAGAAAGAATTCATAATCATCCGGTTAGGATCGATCTAAACCAGCCCATTATGCATACGA
TTCAACATGCCAAGTAGTAAACAACTTATTAGAAACACAAGACAGTCAATCAGAAATGTCACCAAATCCCCTGCTCTTGGGGGATGCCCTCAGTGCCGAG
GGACATGTACTAGGGTGTATGTGCGGCTTGTTCAGATTTCAGATTGTGGGTTGGGACAAAAGAAAGAATTTTTCCACTATCCGAGATCAGTACCGATGAA
TAGGATAGAATGGAAGACTCCCCTTCACTAT