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Detailed information on CNT30504293


BLAST search results

BLAST vs Swiss-Prot:
sp|Q332V2|CLPP_LACSA, E-value = 6e-56

BLAST vs NONCODE:
NONCSAT000277, E-value = 4e-54

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30268958Nicotiana attenuataChenopodium quinoa15.9554.3991.56403forward
CNT30730673Nicotiana attenuataCorchorus capsularis7.5228.6189.47190forward
CNT30711983Nicotiana attenuataGlycine max5.329.0787.31134forward
CNT3045660Nicotiana attenuataPrunus dulcis6.1837.2394.87156forward
CNT30559403Nicotiana attenuataActinidia chinensis5.8229.485.03147reverse complement
CNT30588249Nicotiana attenuataMusa acuminata7.6441.6887.05193forward
CNT30235691Nicotiana attenuataBrassica oleracea5.320.8191.04134forward
CNT30556069Nicotiana attenuataOryza glaberrima5.4245.2185.4137forward
CNT30173048Nicotiana attenuataTrifolium pratense4.1626.7286.67105forward
CNT3060029Nicotiana attenuataArabidopsis lyrata15.8429.9688.75400forward
CNT3083483Nicotiana attenuataBrassica juncea8.9152.8288225forward
CNT3018189Nicotiana attenuataZea mays5.551.8787.05139forward
CNT30607170Nicotiana attenuataGossypium raimondii18.3764.1889.87464forward
CNT30218200Nicotiana attenuataKalanchoe fedtschenkoi16.1136.1889.19407forward
CNT30655376Nicotiana attenuataRosa chinensis18.3342.8791.79463forward
CNT30154187Nicotiana attenuataPrunus persica16.3950.3691.79414forward
CNT30644762Nicotiana attenuataCannabis sativa6.3337.3891.25160forward
CNT3021978Nicotiana attenuataPopulus trichocarpa7.2455.2988.52183reverse complement

Expression of CNT30504293

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MLPLPFLFVFLFFFSIHFIQVSLRVEITLLDN*

>peptide 2 (32 aa)
MNGVPSSILSHSPVLIIDTVKVVFLLLCQLMI*

>peptide 3 (32 aa)
MRLLMHTVQKKCESMYRFQSSFFFSRKVLSYF*

>peptide 4 (57 aa)
MDIWSHKLHSIINSHPRYYPAPRRVYKQIQIFGLILDTEIYHKTNKLIRNLAINLLA*

>peptide 5 (50 aa)
MMMNYFYLLFNRIFNSKIKSQITDLREIHVIFIQPLQDQQFHKLGLLLLT*

>peptide 6 (45 aa)
MIKLPSFLSEELKNTMMAPLLYMFIFSFFFFCDSAIPKFLFNPIK*

>peptide 7 (36 aa)
MNSNHRYLTNPIGFFLNGAWILHFFSPTKPTINYSN*

Sequence

>CNT30504293
TAAACTTCATACACAATAGAGGGATATGATAGAGTTTTTTTTTTAATAATGAATGGAGTTCCTTCTTCCATCCTATCCCATTCACCGGTACTGATCATTG
ATACTGTAAAAGTCGTTTTCTTGCTTTTGTGCCAGCTCATGATCTAAACGAGTCGCACATACACCCTAGTACATGTTCCTCGACGCTGAGGGCACCCCCG
AAGAGCGGGGGATTTCGTGACATTTCTGATTGGCTGTCTTGTATTTCTAATAAGTTGTTTAATAGTTGGCATGTTGAATCGTATACATAATATGATGGGT
TGGTTTAGATTGATCCTAACCGAATGATGATGAATTACTTCTATTTACTATTTAATAGAATATTCAATTCGAAGATAAAATCTCAAATCACAGATTTGCG
CGAAATCCATGTTATTTTCATTCAACCGCTACAAGATCAACAATTCCATAAGCTTGGGCTTCTGTTGCTGACATAAAAACATCTCTTTCCATATCTTCGG
ATACAACCCATAAGGGTTTCCCCGTTCTTTGTACATAAACCCTTGTGAGGGTTTCACGCAGTTTCAGCAGTTCTTCCGCTTCCAGGACAAATTCGCCCGT
TTGTGCCTCATAAAAAGAACTAGCAGGTTGATGGATCATTACCCTGATGATATAACAAAATAAAAGCTTCCCCTATCTCGCATGATAAAGCAAAGAGAAA
AGAAAGATAAAGAATAGAAAAAAGATAGAATTGAACAACCGTACAGGCATCTTTTGTGCATACGGCTCTACAAGAAAATTGACCTCCCCTCCTTTCTATT
GAAGAAAGAGAAAAATCGAATCTATCAGACTCAGATGGGTAAATGATCAAATTGCCATCCTTCCTTTCGGAGGAGTTAAAAAATACTATGATGGCTCCGT
TGCTTTATATGTTTATTTTTTCTTTTTTTTTTTTCTGTGATTCAGCAATCCCAAAGTTTCTTTTTAATCCGATCAAATAAGGAAAAAATCTTTTTTTCGT
ACTCTTTCATAACATAAATATTGTTAAGAACTCTCCGGCATGAAAACAAAAAAGTTTGTGACGCTGAACTGAACTCCCGATAGATAAGAGAAAATCGGAA
ATACCCCTTATCTCATACTACTCTCTCGATACAGAATCTAATGTTTTGAAAAAAAAAACAATACAAAAATTTCTCATATCGAATTCGAAGTGCCATGCTA
TTATTACTTAGTATTCATATGGCGAAGGCATAGTCTTCTTTTTTCTCTCAAATAAAAACCTCATTGGCGCCAAGCGTGAGGGAATGCTAGACGTTTGGTA
ATTTCTCCTCCGACCAGGATAAAAGATCCCATTGAAGCGGCTAATCCCATGCATATTGTATGGACATCTGGTCGCACAAATTGCATAGTATCATAAATAG
CCACCCCAGGTATTACCCAGCCCCCAGGAGAGTTTATAAACAAATACAGATCTTTGGTCTCATCCTCGATACTGAGATATACCATAAGACCAATAAGTTG
ATTCGAAATCTCGCTATCAACCTCTTGGCCTAAAAAAAGTAATCTTTCTCGATAAAGTCGGTTGATTAGGGTAAAATTGTATCCCTTAGGAACCGTACAT
GCGCCTTTTGATGCATACGGTTCAAAAAAAGTGTGAATCAATGTATAGATTCCAGTCCTCTTTCTTTTTTTCTAGAAAGGTTCTTTCTTACTTCTAACGA
AAGGGCTTTTCTTCGATTTTTCAATAAAGACGGGTTTTGACTCCTTTTTTATATTTTCGATTTTCCATTATAAAATTTGAAAGGGTCATTAAACTTATCG
AATTAACTTCTCATTGATGTATTCTTTCATCGAGATTTAATCCAAACCGCGATGGTATTTTCTTGTTCCTGAATGGGTCTGTTTCATCTTTTTAGGTTTA
TGCTCTACTCCGGGTAAAGATCCGCCCGATTTGGATTTGTACATATAGGACAAATGCTCCCATTACCATTTCTTTTTGTATTTCTTTTTTTTTTTTCAAT
TCATTTTATACAAGTATCTCTTAGAGTTGAGATAACTTTGCTTGACAATTAGGATCTCTTTACAAAGAAAAAATATGAATAGCAATCATAGATATCTTAC
CAATCCAATTGGGTTTTTTCTAAACGGAGCCTGGATACTTCATTTTTTTAGTCCAACCAAGCCAACCATAAATTATTCTAATTGAATTATTCTAATTGAT
AATAGTAATATGAATCCCCTCAAAAATGGATCTAATTGCACTTCACGCTCCAAATTTTTGATGATTAAATTTATCTTTCTTGGGTGAAACGGGGGATATC
TCGATCGGGGGAGAGAACGGGGAAATACCATATGACCCAATATATCTGACAAGTCGCACTATACGTCAACCCAAGATGCATCTTCCTCTCCAGGACTTCG
GAAAGGAACTTTTGGAACACCAATAGGCATTAAATAAAGAAATAACTAAATACTATATTTCACTTTGAGGTGGAAACGTAACAATTTTTTTTATTGTCTT
TATAATATTCATATTGGTTTTTATCG