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Detailed information on CNT3060121


BLAST search results

BLAST vs Swiss-Prot:
sp|P49168|RR12_PINCO, E-value = 4e-15

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30730673Arabidopsis lyrataCorchorus capsularis18.1926.6687.57177forward
CNT30401817Arabidopsis lyrataBeta vulgaris17.3769.2682.84169forward
CNT30200508Arabidopsis lyrataPisum sativum4.6220.1895.5645forward
CNT30711983Arabidopsis lyrataGlycine max13.9829.588.24136forward
CNT30542072Arabidopsis lyrataBrassica napus85.6169.0194.84833forward
CNT30556069Arabidopsis lyrataOryza glaberrima12.9541.5884.92126forward
CNT30599240Arabidopsis lyrataFraxinus excelsior20.1447.2386.73196reverse complement
CNT3018189Arabidopsis lyrataZea mays13.775085.82134forward
CNT30609565Arabidopsis lyrataGossypium raimondii21.3825.0387.5208forward
CNT30368658Arabidopsis lyrataSorghum bicolor12.9521.3284.92126reverse complement
CNT3021978Arabidopsis lyrataPopulus trichocarpa15.6245.9286.18152reverse complement

Expression of CNT3060121

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MRSPLYSNGISFLKLIRSFTLLVRSFLSRVEFFF*

>peptide 2 (37 aa)
MNDLYFLNNESSSSILFYSQVLIRDISKRIYFLCLSL*

>peptide 3 (47 aa)
SLLITKRIIPMYKKNSNGFCYSNLPHHYFLLGIFLCFERRNSLDIKK*

Sequence

>CNT3060121
CTAGTCTATTAATAACCAAACGAATTATTCCAATGTATAAAAAAAATTCCAATGGCTTTTGCTACTCTAACCTTCCCCACCACTATTTTTTGCTAGGTAT
TTTCCTTTGCTTTGAAAGGAGAAATTCCCTTGATATAAAAAAATAGAATTGGATAAATAGTGGGTTCCATCGTTTCTATGGTTACTTCTAAAACGGTGAG
GTCCTCTCTATACACCGGAGCTCCTTCTTTTAATTAATCAATACTATTGGTAACTTGTACAATTCACATTCTTTGGCTCTACCCCATGAATATTCCAGTA
ATAGGTCTTTCACAATGAGATCCCCTTTATACAGTAACGGTATTTCATTTTTAAAATTGATTAGGTCATTTACCCTGTTAGTCCGTTCTTTTCTTTCAAG
AGTGGAATTTTTTTTCTAAAAAATGAAATTTCCCCCGCTTAATGGATAATCATTTGTTATCATTGGGGGTTTTCTAAAAAATGGAGTTGATTGGATTTGC
ACCAATGTAAACCATAAGTTTCAGACACAATAGAATATATGAACGATCTATATTTTTTAAATAATGAATCGAGTTCGTCCATTCTATTTTATTCACAGGT
ACTGATCCGTGATATTTCAAAAAGAATTTACTTTTTATGTCTCAGTCTATGATCTAAACGAGTCGCACATACACCCGAGTACATGTTCCTCGTCGCTGAG
GGCATCCCCGAAGCGCTGGGGATTTCGTGACGTTTCGGATTGGCTGTCTTGTATTTCTAATAAGTTGTTTAATGGTTGGCATACGGAATCATATAAATAA
TGGGCTGGTTTAGATTAGTTCTAACCGGCTAATTCTGAATTACTTCTCTTCAAGATTCTCTTCAATATTTTTTTATATTGAAGAGAATATGAAACTAAAC
CTTTAATCTAAAAAGATATAAAATTAGAAATTGTAGATTTGCATGAAATCGCTCCTATTTTTTATTGAACCGC