Detailed information on CNT30103691


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000959, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30293006Oryza rufipogonTriticum aestivum17.5986.8994.43305reverse complement
CNT30556069Oryza rufipogonOryza glaberrima8.6549.5100150forward
CNT3018189Oryza rufipogonZea mays8.353.7390.28144forward
CNT3068316Oryza rufipogonLeersia perrieri18.0554.0697.44313reverse complement
CNT30368658Oryza rufipogonSorghum bicolor10.931.9895.24189reverse complement
CNT30110673Oryza rufipogonOryza longistaminata8.5954.98100149reverse complement

Expression of CNT30103691

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MNRRLLPMGELLLISNLDDWICTKGNQKFHIP*

>peptide 2 (33 aa)
MGDSNTKQKEIGIYSSFFPNKPSCPLHIGTYRV*

>peptide 3 (36 aa)
MDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX*

>peptide 4 (65 aa)
MIDHYEVFPLNCIKPEFRVEINLQEIWPLPILKHFWKPHWISIAVLVKHFIPYNIDKSISFGFVC*

>peptide 5 (92 aa)
MDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLLVRFFKIKEHKPLSFYYYFLRLMNSRLLPMGELLLISNLDDWICTKGNQKFHIP*

Sequence

>CNT30103691
CACATTCTTTGGCTCTACCTATCCATTATAGAGTAAATAGCTCTTTTCACAATAAGAGTTATCCATACAGTGACGACATTTAATTATGAAAGTTGGCTAA
GTAGCTGACCCTCTTAGTCCTTTTTTTAGAACTTGTATAGTTCACATTCTTTGGCTCTACCTATCCATTATAGAGTAAATAGCTCTTTTCACAATAAGAG
TTATCCATACAGTGACGGCATTTAATTATGAAAGTTGGCTAAGTAGCTGACCCTCTTAGTCCGTTTTTTTAAGATAAAGGAGCATAAGCCTTTATCTTTT
TATTACTATTTCCTCCGCTTAATGAATAGACGTTTGCTACCAATGGGGGAATTGCTTCTTATTTCCAATCTAGATGATTGGATTTGCACAAAAGGAAACC
AGAAATTCCATATACCGTAGAAATCTAGGATAGAGAAGCTCTATCCTATTCATTGGTACCGATCATGGATANNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACCCTCTTAGTCCGTTTTTTTAAGATAA
AGGAGCATAAGCCTTTATCTTTTTATTACTATTTCCTCCGCTTAATGAATAGCCGTTTGCTACCAATGGGGGAATTGCTTCTTATTTCCAATCTAGATGA
TTGGATTTGCACCAAAGGAAACCAGAAATTCCATATACCGTAGAAATCTAGGATAGAGAAGCTCTATCCTATTCATTGGTACCGATCATGGATANNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAACC
GTTGGCATGTCGTATGTATATAGAAAAAATGGATTGGTTTAGATCGATCTTAACCTGAATGATTGATCATTATGAAGTATTTCCATTAAATTGCATAAAA
CCCGAATTTAGGGTTGAAATAAATTTACAAGAAATCTGGCCACTACCAATCCTTAAACATTTCTGGAAACCACACTGGATCAGTATCGCAGTGCTCGTCA
AGCATTTCATCCCCTACAATATCGACAAGTCCATAAGCTTTGGCTTCGTCTGCTGACATAAAAACATCCCTTTCCATGTCTTCGGATACAACCCAAAAAG
GCTTGCCTGTTCTTAGTGCATAAACCCTTGTGATCATTTCGCGAACTTTGTGTAACTCTTCCACTTCTAGTAAAAATTCTGGTGTTCTTGCCCGATAATA
AGCACTAGCAGGTTGGTGAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNAAGTAGGATAAGACAGATTGAATAAAGAAAAAAGAATGGGTGATTCGAATACTAAACAAAAAGAGATAGGGATCTATTC
TTCGTTTTTTCCAAATAAGCCAAGCTGCCCATTGCATATTGGCACTTATCGAGTATAGAATAGATCTGCTTCTCTTTCTTCTTACGAACAGAATTGGCTT
CTTATTTTTAATGGAATGAAATAAATATTCACGCTTTCTGACACAGAATCCCCTAGAAGGGTTAGGTACATAGGATATGGATAGTCTTTGCCAATGCGAT
AAAATAAAGTGACATCGTGTCTATTTTTCTTTGC