Detailed information on CNT3018154


BLAST search results

BLAST vs Swiss-Prot:
sp|P00827|ATPB_MAIZE, E-value = 0.0

BLAST vs NONCODE:
NONOSAT000401, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673496Zea maysSetaria viridis8.1643.2695.793forward
CNT30197557Zea maysPisum sativum39.0428.7190.11445forward
CNT30710344Zea maysGlycine max10.7925.9587.8123forward
CNT30224691Zea maysHordeum vulgare13.1654.9593.33150forward
CNT30592630Zea maysMusa acuminata24.2160.9382.61276forward
CNT30554166Zea maysOryza glaberrima6071.494.74684forward
CNT3082983Zea maysBrassica juncea65.0930.984.91742forward
CNT30596697Zea maysOryza meridionalis13.5139.991.56154forward
CNT30416813Zea maysPapaver somniferum74.337.9585.12847forward
CNT3058692Zea maysAmborella trichopoda1544.391.23171forward
CNT30104429Zea maysOryza rufipogon57.7299.795.29658forward
CNT30726985Zea maysLupinus angustifolius65.2634.486.56744forward

Expression of CNT3018154

Peptides detected in this lncRNA

>peptide 1 (77 aa)
MPNQKKYPKIQKSKGNELVNSIKKKRGLALDFVAQANPIQSFTYGMNPLESSIHFFHINFAFCEGSVPTLLSYLGLRY

>peptide 2 (36 aa)
MNKSTSCLLTSRKYSAIVRAVKPTLIRAPGGSFIWP*

>peptide 3 (64 aa)
MNRKCCTSIHRTQIVNRLPKNVKNSSESSSTDWNTERSSRVNHFHSSHQPLCSTHSHSSNSIIS*

Sequence

>CNT3018154
CTGCTTGAACAAAACGAAAGATATTATCGATGAATAAAAGCACGTCTTGCTTATTAACATCTCGGAAATATTCTGCCATAGTTAGGGCAGTTAAACCAAC
TCTCATACGAGCTCCCGGCGGTTCATTCATTTGGCCATAGACTAGAGCTACCTTTGATTCCTCAATATTTTTTTCATTAATTACTCCGGATTCCTTCATT
TCCATATAAAGATCATTTCCTTCACGAGTCCGTTCCCCTACTCCGCCAAATACGGATACGCCTCCATGAGCTTTAGCAATGTTATTGATTAATTCCATGA
TGAGTACTGTTTTACCTACTCCTGCCCCCCCAAACAGTCCGATTTTTCCTCCACGTCGATAGGGAGCTAAAAGATCGACCACCTTAATACCTGTTTCAAA
GATAGATAATTTCGTATCTAACTCGATAAAGGCAGGCGCAGATCTATGAATAGGAAATGTTGCACTAGTATCCACAGGACCCAAATTGTCAATAGGCTCC
CCAAGAACGTTAAAAATTCGTCCGAGAGTAGCTCCACCGACTGGAACACTGAGAGGAGTTCCCGTGTCAATCACTTCCATTCCTCTCATCAACCCCTCTG
TAGCACTCATAGCCACAGCTCTAACTCGATTATTTCCTAATAATTGTTGTACCTCACAAGTCACATTAATTTGCTTATCGGCAGTGTCTCGACTCTTGAC
TATCAAAGCATTATAAATATAAGGCAACTTGCCCGGGGGAAAAGTGATATCCAGCACGGGTCCAATAATTTGATCAATACGCCCTACGCTTTTTTCTTCA
ATTGTGGAAATCCCGGGACGCGAAGTAGTAGGATTGGTTCTCATAATTATCACATAATTTTCAAAAAAAAAGGAATTTGTCGAAATTTTTTTTCTTGTTG
AATAATGCCAAATCAAAAAAAATATCCAAAAATCCAAAAGTCAAAAGGAAATGAATTAGTTAATTCAATAAAAAAGAAAAGGGGACTCGCACTTGATTTC
GTTGCCCAAGCGAATCCCATTCAATCGTTTACTTATGGAATGAATCCGTTGGAAAGTTCAATCCATTTTTTTCATATAAATTTCGCCTTTTGTGAAGGAT
CTGTGCCTACTCTACTTTCCTATCTAGGACTTCGATATAC