Detailed information on CNT30592630


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8MBQ3|ATPB_IPOQU, E-value = 6e-29

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30197557Musa acuminataPisum sativum58.0616.9786.31263forward
CNT30554166Musa acuminataOryza glaberrima36.217.1288.41164forward
CNT3082983Musa acuminataBrassica juncea40.847.7185.41185forward
CNT3018154Musa acuminataZea mays60.9324.2182.97276forward
CNT30416813Musa acuminataPapaver somniferum61.3712.4684.17278forward
CNT30104429Musa acuminataOryza rufipogon36.224.8587.8164forward
CNT30726985Musa acuminataLupinus angustifolius60.9312.7685.51276forward

Expression of CNT30592630

Peptides detected in this lncRNA

>peptide 1 (57 aa)
MLLINSMMSTVLPTPALLPIVPFFLHGDKELKDQLLEFLFLGLRIEVYNSIKAGAGL*

>peptide 2 (49 aa)
ISLTSTFAHSAKYGYAFMSFGNVVDQFHDEYCFTYSSSPPNSPIFPTRR*

>peptide 3 (31 aa)
MLRGAPVSITFIPIISPICSTHSYCSNSLIS*

Sequence

>CNT30592630
ATTTCCCTCACTAGTACGTTCGCCCACTCCGCCAAATACGGATACGCGTTCATGAGCTTTGGCAATGTTGTTGATCAATTCCATGATGAGTACTGTTTTA
CCTACTCCAGCTCTCCTCCCAATAGTCCCATTTTTCCTACACGGCGATAAGGAGCTAAAAGATCAACTACTGGAATTCCTGTTTCTTGGATTGAGAATTG
AAGTCTATAACAGTATAAAGGCAGGTGCAGGTCTATGAATAGGAGATGTTGTGCTAGTATCTACAGGACCTAAATTAGCAACGTTCTTGGGGAGCCAGTT
TCGAATTCGTCCGAGGGCCGACAGGAATGCTTAGAGGAGCTCCTGTGTCAATCACTTTCATTCCTATTATCAGTCCCATCTGTAGCACTCATAGCTACTG
CTCCAACTCTCTTATTTCCTAGTCATTGTTGTACCTCAACAAGTAACATTCAT