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Detailed information on CNT3082983


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9MS49|ATPB_BRANA, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30197557Brassica junceaPisum sativum37.2357.6888.93894forward
CNT30710344Brassica junceaGlycine max7.5838.486.26182forward
CNT30592630Brassica junceaMusa acuminata7.7140.8485.41185forward
CNT3088631Brassica junceaVigna radiata8.8730.9188.26213reverse complement
CNT30539885Brassica junceaBrassica napus11.3758.9699.27273forward
CNT30237627Brassica junceaBrassica oleracea11.8722.4895.44285reverse complement
CNT30554166Brassica junceaOryza glaberrima24.5761.5983.56590forward
CNT3018154Brassica junceaZea mays30.965.0984.91742forward
CNT30154378Brassica junceaPrunus persica18.2496.2690.18438forward
CNT30416813Brassica junceaPapaver somniferum37.0339.8388.41889forward
CNT30645933Brassica junceaCannabis sativa36.492.5886.96874forward
CNT3058692Brassica junceaAmborella trichopoda7.3745.8589.83177forward
CNT30104429Brassica junceaOryza rufipogon27.2899.2483.05655forward
CNT30577541Brassica junceaOryza barthii14.1241.684.07339forward
CNT30116966Brassica junceaOryza nivara33.4922.4584.2804forward
CNT30726985Brassica junceaLupinus angustifolius34.5738.3788.07830forward
CNT30115345Brassica junceaEutrema salsugineum8.7540.9492.38210forward

Expression of CNT3082983

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MISFTSESQTIRFGVSTQRFKVISSIYSPFLSS*

>peptide 2 (34 aa)
CLISFCSQLFFFFFFSRFWILFFYTSASYKIKSY*

>peptide 3 (35 aa)
MWWQEQGQSNRLQKAFYPIKRIPRILLVQNGRYCR*

>peptide 4 (30 aa)
MDEFRILSYLGFTYTTYITVKSDFIIILILN

>peptide 5 (50 aa)
MSLFFSASFTKIVISLLPILAKPPIRAIVNHWLLRRIFKIPISTAVAIGA*

>peptide 6 (82 aa)
MIWAIRPRLFFSRIETAGSEVVGFILIIKNMFNFVAKFFEYRKNLRIVNSLVNSIINGSKHSISLVPPKRICNSIFYLIKFQ*

Sequence

>CNT3082983
GTGTCTAATAAGTTTTTGTAGCCAGCTTTTTTTTTTTTTTTTTTTTTCTCGCTTTTGGATCCTATTTTTTTATACGTCAGCTAGTTACAAAATCAAATCG
TATTGAGAGCCTCGACGCGTGTCCGAGCTCGTCTGAGAGCTAGATTTGCCTCAATTGTTTGTCTCTTGCCTTCAGCTTTTCTCAAGTTCGCCTCTGCTAT
TTCAAGAGTTTGCTGAGCTTCTTGTGGATCAATGTCACTATTCTTCTCTGCATCATTTACTAAAATAGTAATTTCATTATTGCCTATTCTAGCAAAACCG
CCCATCAGAGCCATTGTTAACCATTGGTTATTAAGGCGTATTTTCAAAATACCTATATCAACAGCTGTGGCAATCGGCGCGTGATTTGGTAATACGCCAA
TTTGTCCACTATTAGTAGATAAAATGATTTCTTTTACTTCTGAATCCCAAACAATTCGATTCGGAGTCAGTACACAAAGATTTAAGGTCATTTCTTCAAT
TTACTCTCCATTTCTAAGTTCGTAGCCTTCGCAGTAGCTTCATCGATGTTACCCACTAAGTAAAAGGCCTGTTCAGGAAGAGAATCAAATTCTCCGGAAA
GGATCAAATTAAACCCTCTAATTGTTTCCGCTAGCCCAACATATTTTCCCGGAGAACCTGTAAATACTTCTGCTACGAAAAAAGGTTGTGATAAGAAACG
CTCAATCTTTCGTGCTCTTGCGACGGTTAAGCGATCCTCTTCGGATAATTCGTCCAACCCCAGGATAGCTATAATGTCCTGAAGCTCCTTGTAACGTTGT
AAAGTTTGCTTTACTTGTTGCGCAGTTTCATAATGTTCCTCGCCAACGATTCGAGGTTGTAGCATAGTTGACGTTGAATCTAAAGGATCTACCGCTGGAT
AGATACCTTTAGCAGCTAATCCTCTTGATAGTACGGTAGTCGCATCTAAATGTGCAAATGTGGTGGCAGGAGCAGGGTCAGTCAAATCGTCTGCAGAAGG
CATTCTACCCAATAAAGCGGATACCTCGGATCCTGCTTGTACAAAACGGAAGATATTGTCGATAAATAGAAGTACGTCTTGCTCATTAACATCTCGGAAA
TATTCTGCCATAGTTAAGGCAGTCAGACCAACTCTCATACGAGCTCCCGGCGGTTCATTCATCTGACCGTAGACTAGGGCTACTTTGGAGTCCGCAAGGT
TTAGTTCATTAATGACTCCAGATTCTTTCATTTCCATGTAAAGATCATTTCCTTCACGAGTTCGTTCGCCTACTCCACCAAATACGGATACACCACCATG
AGCTTTGGCAATGTTGTTGATCAATTCCATAATTAGTACTGTTTTACCCACGCCAGCCCCACCGAATAGTCCGATTTTTCCCCCACGACGATAAGGGGCC
AAAAGATCTACTACTTTAATTCCTGTTTCAAAAATAGATAAGGTTGTATCTAAGTCTATAAAAGCAGGCGCGGATTTATGGATAGGAGATGTTGTGAGAG
TATCGACAGGACCTAAATTATCAACAGGTTCCCCAAGTACATTGAAAATTCGTCCTAGAGTCGCTCCGCCGACTGGAACACTTAGAGGATTTCCCATATC
AACCACGTCCATCCCTCTCTTTAAACCCTCGGTCGCGCTCATAGCTACAGCTCTAACTCGGTTGTTTCCTAATAATTGCTGTACTTCACAAGTCACATTA
ATTTCTTGACCAAGCGTATCTCGACCCTTAACCACCAGAGCATTGTAAATATTAGGCATCTTGCCCGGGGGAAAGGCTACATCCAGTACCGGACCAATGA
TTTGGGCAATACGTCCCAGGTTGTTTTTTTCACGTATTGAAACCGCTGGATCCGAAGTAGTAGGATTTATTCTCATAATAAAAAATATGTTCAATTTTGT
TGCGAAATTTTTCGAATACAGAAAAAATCTTCGTATAGTAAATTCATTGGTTAATTCAATAATAAATGGGAGTAAGCACTCGATTTCATTGGTACCACCC
AAGCGAATATGCAATTCAATTTTTTACTTAATTAAATTTCAATGAAGGAATAGTCGTTTTCAAGCTCAACTAACCAAAACCTAGTTTTAAAATAAAAAAT
ATATGAATAAAAAAAATTTTTGTGGAAAGTCTTTGATTTATTTGTCATAATAGGCAAGACTTTGTTTTATCTAGCCAATTCCGAAATGGAACTCTATTTA
TGATTCATTATTTCGATCTCATTAGCTTTTTTTTTTTCATATTTTCATTTTAGCATATCCGGTTATGCGTCCCATCGATATCAACCCCCCCCTTGTTTTT
CATTTTCATGGATGAATTCCGCATATTGTCATATCTAGGATTTACATATACAACATATATTACTGTCAAGAGTGATTTTATTATTATTTTAATATTAAAT
A