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Detailed information on CNT30197557


BLAST search results

BLAST vs Swiss-Prot:
sp|O03066|ATPB_BLEOC, E-value = 4e-118

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30592630Pisum sativumMusa acuminata16.9758.0686.31263forward
CNT3088631Pisum sativumVigna radiata15.2934.487.34237reverse complement
CNT30554166Pisum sativumOryza glaberrima17.8128.8187.68276forward
CNT3082983Pisum sativumBrassica juncea57.6837.2388.93894forward
CNT3018154Pisum sativumZea mays28.7139.0490.11445forward
CNT30154378Pisum sativumPrunus persica28.7197.891.01445forward
CNT30645933Pisum sativumCannabis sativa61.74101.3887.04957forward
CNT3058692Pisum sativumAmborella trichopoda26.19105.1886.95406forward
CNT30104429Pisum sativumOryza rufipogon21.6150.7688.66335forward
CNT30577541Pisum sativumOryza barthii21.5540.9883.53334forward
CNT30116966Pisum sativumOryza nivara59.2925.6684.55919forward

Expression of CNT30197557

Peptides detected in this lncRNA

>peptide 1 (41 aa)
VFLLTIFFIVIFHLFSCTNLLGDPLDSLYDSLYSCLSSPER*

>peptide 2 (50 aa)
MSLALSASVTKIVISLLPILAKPPIRAIVNHRSLRRILKIPISKAVAIGA*

>peptide 3 (34 aa)
MSFGNVIDQFHNEYCFTYPSSTEKSYFSATAIRS*

>peptide 4 (36 aa)
MCKCRGRSRIGQIVCRYINCLNRSYRPFFGRSNSFL*

Sequence

>CNT30197557
AGTTTTTCTACTCACCATTTTTTTTATTGTAATTTTCCATCTTTTTTCTTGCACCAACTTGTTAGGAGATCCTCTTGATAGTCTCTACGATAGCCTCTAC
TCGTGTCTTAGCTCGCCAGAGAGATAGATTTGCTTCAATTGTTTCTCTCTTGCCTTCAGCCTTATTTAAGTTCGCTTCTGCTATTTGAAGAGTTTGTTGT
GCTTCTTGTGGATTAATGTCACTAGCGCTTTCTGCATCAGTTACTAAAATAGTGATCTCATTATTGCCTATTCTAGCAAAACCGCCCATCAGAGCCATCG
TTAACCATCGGTCCTTAAGGCGTATTCTCAAAATACCTATATCTAAAGCTGTGGCAATAGGCGCATGATTTTGTAATACCCCAATTTGTCCACTATTAGT
AGATAAAATAATTTCTTTCACTTCGGAATCCCAAACAATTCGATTGGGGGTCAGTACACAAAGATTAAAAGTCATTTCTTGAATTTGTTCTCCATTTCTA
AGTTAAGTTCGTAGCCTTCGCAGTAGCTTCATCGATATTACCCACCAAATAAAAGGCTTGTTCAGGAAGACTATCTAATTCTCCAGAAAGAATCAATTGA
AATCCTCTAATTGTTTCTGCTAGACCAACATATTTCCCTGGAGAACCGGTAAATACTTCTGCTACGAAAAAAGGTTGTGAGAAGAAACGTTCAATTTTTC
GTGCTCTTGCTACGGTTAAGCGATCCTCTTCGGATACTTCGTCCAACCCAAGAATAGCTATCATGTCCTGAAGTTCTTTGTAACGCTGTAACGTTTGTTT
AACTCTTTGCGCAGTTTCATAATGTTCTTCACCGACGATACGAGGTTGGAGCATGGTTGACGTTGAATCTAAAGGATCTACTGCTGGATAGATACCTTTG
GCAGCTAATCCTCTTGATAGTACAGTAGTTGCATCCAAATGTGCAAATGTCGTGGCAGGAGCAGGATCGGTCAAATCGTCTGCAGGTACATAAACTGCTT
GAATAGAAGTTATAGACCCTTCTTTGGTAGAAGTAATTCTTTCTTGTAAAGTACCCATTTCAGTACCCAGGGTAGGTTGATAACCCACAGCGGAAGATAT
TGTCGATAAATAGAAGGACGTCCTGCTCATTGACATCTCGGAAATATTCTGCCATAGTTAGGGCAGTTAAACCAACTCTCATACGAGCTCCGGGGGGTTC
ATTCATTTGACCGTAGACTAGAGCTACTTTTGATTCCGCAATATTTTTTTCATTAATTACTCTGGATTCTTTCATTTCCATATAAAGATCATTTCCCTCA
CGAGTACGCTCACCTACTCCGCCAAATACGGATACACCTCCATGAGCTTTGGCAATGTTATTGATCAATTCCATAATGAGTACTGTTTTACCTACCCCAG
CTCCACCGAAAAGTCCTATTTTTCCGCCACGGCGATAAGGAGCTAAAAGATCGACTACTTTAATTCCTGTTTCAAAAATGGATAATTGTGTATCTAACTG
TATAAAAGCAGGCGCAGATCTATGAATAGGAGATGTTGTGCGAGTATCTA