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Detailed information on CNT30178846


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30708714Secale cerealeGlycine max14.8129.681.82132forward
CNT30393023Secale cerealeTriticum turgidum14.5929.7580.77130forward
CNT30554109Secale cerealeOryza glaberrima13.3623.9486.55119forward
CNT30135940Secale cerealeLolium perenne17.6229.5182.17157forward
CNT30619906Secale cerealeCajanus cajan7.413086.3666forward
CNT30706772Secale cerealePrunus avium13.5834.4781.82121forward
CNT30102065Secale cerealeOryza rufipogon13.3620.0385.71119forward
CNT30576737Secale cerealeOryza barthii13.3627.3686.55119forward
CNT30113801Secale cerealeFicus carica14.8131.9683.33132forward

Expression of CNT30178846

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MKILYCTGNLLHKRSKHHLGETIGATMHSKATLHY*

>peptide 2 (51 aa)
MRPPSSAPKVMAGLTWPPEMFTATDTATASASACASATATSPPAVLMSWYIF

>peptide 3 (49 aa)
MSPNVITASSSTACQSPTPDAREKPGGGGGRRRWRRGAARPSRRGRARG*

>peptide 4 (38 aa)
MAAPSNGPPASMLAPSRNPTASGPMVPTWPLLGSITVA*

Sequence

>CNT30178846
CAGTACAGTAGGCAACAATTAACCAACGCAATATCACGAACACCATAACAGATGAAGATACTATATTGCACTGGAAACTTATTACACAAACGGAGCAAAC
ATCACCTCGGAGAAACTATAGGGGCAACCATGCACAGCAAGGCCACCCTCCATTATTAACCAAAGTATCGCACACTAAATATAGAAACGAAAAGCCATAT
ACATACATATATAGCGATAAAGCATAGCTGCAAGTGTTGGATTTTAAGGATTTGAAGCAGCAGCTTTGGCGGTGGCGGCTAGTAGTCCTCCGGCGCGAGC
GGCTGGTGGGCGTGAGCCGCGGTCTCGGTAGACGGGATGACGACGTACTCGTAGAGGAGCCCAGCGATGCCGGAGCCGAGGAAGGGCCCGAGCCAGTAGA
CCCAGTGGTGCCTCCACCGCCACCCGACGAGCGCCGGCCCGAAGACCCGCGCCGGGTTCATGGCGGCGCCATCGAACGGCCCGCCGGCGAGTATGTTAGC
ACCGAGCAGGAACCCCACGGCGAGCGGCCCGATGGTGCCCACGTGGCCCCTCTTGGGGTCGATCACCGTCGCGTAGTAGGTGTACATGAGCCCGAACGTC
ATCACCGCCTCCAGCAGCACCGCGTGCCAATCCCCCACCCCCGACGCCAGGGAGAAACCGGGCGGAGGAGGAGGGAGGCGACGATGGCGCCGAGGAGCTG
CGCGACCCAGTAGAAGAGGGCGCGCACGAGGGTGATGCGGCCGCCGAGCAGCGCGCCGAAGGTGATGGCCGGGTTGACGTGGCCCCCGGAGATGTTCACG
GCCACGGACACCGCCACGGCCAGTGCCAGCGCGTGCGCCAGCGCCACGGCCACCAGCCCGCCCGCGGTGCTCATGTCATGGTATATCTTCC