Detailed information on CNT30708714


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FY14|TIP1_MEDTR, E-value = 4e-67

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30178846Glycine maxSecale cereale29.614.8181.82132forward
CNT30293493Glycine maxTriticum aestivum21.7515.1390.7297forward
CNT30225308Glycine maxHordeum vulgare14.1322.0387.363forward
CNT30592382Glycine maxMusa acuminata36.127.0683.23161forward
CNT30552975Glycine maxOryza glaberrima32.2924.8388.19144forward
CNT30247019Glycine maxAvena sativa27.5810.0188.62123forward
CNT30721484Glycine maxTriticum spelta22.213.5490.9199forward
CNT30154895Glycine maxPrunus persica31.3918.5487.86140forward
CNT30331344Glycine maxDioscorea rotundata25.5616.7991.23114forward
CNT30579360Glycine maxEchinochloa crusgalli3727.1887.27165forward

Expression of CNT30708714

Peptides detected in this lncRNA

>peptide 1 (49 aa)
MPRSKVMLPPTKAPKVTAGLTWPPEMLAPTETATKRAKAWAMEAEMSLL*

Sequence

>CNT30708714
GGAGGCAGTGACGAAGGCGAGGAGGAGGGAGGCCACGATGGAGCCGAGGAGCTGGGCGATGACGTAGACGATGCCGCGGAGTAAGGTGATGTTGCCGCCC
ACGAAGGCGCCGAAGGTGACGGCGGGGTTGACGTGGCCGCCGGAGATGTTGGCGCCGACGGAGACGGCGACGAAGAGGGCGAAAGCATGGGCGATGGAAG
CGGAGATGAGCTTGTTGTAGGCGATGCCGGAACCTGAACCGGCGAACACGAAGATCAAGGTGGAGATGAACTCAGCCAACCCCGCCTTCAACGTGTCGGG
GTGAGTAGCCTCTTCAGGCCTTCCGATGGCGATGTTTCTGATCGGCATCTTCTTCAATCAACGGTGATGATGATGATGATGATGACGACTTATGAAGGAT
CAAGTGAACACCGATCACTCACTGAAACCACTCTCTGTTTCGCTAT