CANTATAdb - search

Detailed information on CNT30676844

BLAST search results

BLAST vs Swiss-Prot:
sp|B8ANF1|CHLH_ORYSI, E-value = 1e-70

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT3017375	Setaria viridis	Zea mays	55.9	40.96	85.28	360	forward
CNT30147901	Setaria viridis	Brachypodium distachyon	22.52	51.79	82.76	145	forward
CNT30726206	Setaria viridis	Lupinus angustifolius	20.19	12.7	84.62	130	forward

Expression of CNT30676844

Peptides detected in this lncRNA

>peptide 1 (58 aa)
YYYMLRLYINHTFYKCLNSVRQKSSELLFGGMLELIHRANQFTGQCPQSCLQPLSRAP*

>peptide 2 (54 aa)
LLHVTTLYKPHILQVSQLSETEELRASIWWNAGTDPSGKPIYRSMPSILSSTSE*

>peptide 3 (31 aa)
MCAEVENSISLEDLLNKGVVCCKAMVRAGRL*

Sequence

>CNT30676844
TATTATTACATGTTACGACTTTATATAAACCACACATTCTACAAGTGTCTCAACTCAGTGAGACAGAAGAGCTCCGAGCTTCTATTTGGTGGAATGCTGG
AACTGATCCATCGGGCAAACCAATTTACCGGTCAATGCCCTCAATCTTGTCTTCAACCTCTGAGTAGAGCTCCCTGAGCTTTTCCAAATTCTCCTCTGAC
GTCTGGACCAGCTTCCTGAATGAGTTGGGGTTGGTCTCCATGAGCCTCTTCCTCATCGCCTCATCTTCAATGAATGTGGAATTTGCCTCCTCATAAACCC
AGTTGTCAACTTGTCCGGATGTTGCACTCCACCCAACAGTGTTTGTGAGCCGCTTCTCGATCTCTCTAACTCCCTCATAGCCGCTCTTCATCATCCCCTC
ATACCACTTTGGGTTCAGTAGCTTTGTCCTTGCATCAAGACGCACCGTCTCCGACAGTGTTCTCACCTGTGCATTTGCTGTGGTTGTATCACTCATCCCA
ACCTGTTTGCCCGGCATGAACTCGAGGGATCCATGTGTGCCGAAGTGGAGAACAGCATCAGCCTGGAAGATCTTCTCAACAAAGGTGTAGTATGCTGCAA
AGCCATGGTGAGGGCTGGCAGACTTTGAGAACAGAAGCCGCATC