Detailed information on CNT30595742


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691492Oryza meridionalisOryza sativa84.2436.6392.45278forward
CNT30671072Oryza meridionalisSetaria viridis28.7923.2886.3295forward
CNT30224542Oryza meridionalisHordeum vulgare28.7912.6291.5895forward
CNT308418Oryza meridionalisZea mays22.1232.8884.9373forward
CNT30686546Oryza meridionalisTriticum urartu26.9738.5394.3889forward
CNT30149841Oryza meridionalisBrachypodium distachyon29.0924.5590.6296forward
CNT30115961Oryza meridionalisOryza nivara92.1227.7994.08304forward
CNT30603734Oryza meridionalisOryza punctata77.5819.589.06256forward

Expression of CNT30595742

Peptides detected in this lncRNA

>peptide 1 (38 aa)
HKYHFSHQHTMRTHRYNYSNIRYINALNYAAASSITRR*

>peptide 2 (35 aa)
MVINLVPALEGDCPDHHHVVDGRQCRSDERTNPENP

Sequence

>CNT30595742
ACATAAGTACCATTTCTCACACCAACATACTATGCGTACACATAGATATAATTACAGTAACATCAGATATATAAACGCGCTTAATTATGCAGCGGCTTCA
TCGATCACCAGACGATAATAACACACGTAGTACTGTAGAGACTTGATCCTCCATCATCTTGCAGCATCAACTTGGTTGATTATTTCAGAGTAATTATCGC
GTAATTAAGATGATGATGATGCATGGTAATTAATTTAGTCCCGGCTCTTGAAGGGGATTGCCCTGATCACCACCACGTGGTAGATGGCCGCCAGTGCCGC
TCCGATGAACGGACCAACCCAGAAAATCCA