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Detailed information on CNT3019525


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691396Citrullus lanatusOryza sativa31.519.2988.4169forward
CNT30640424Citrullus lanatusNymphaea colorata31.968.429070forward
CNT3044723Citrullus lanatusPrunus dulcis30.147.2386.3666forward
CNT30297784Citrullus lanatusTriticum aestivum42.0110.584.7892forward
CNT30221132Citrullus lanatusHordeum vulgare24.6623.3892.5954forward
CNT30394052Citrullus lanatusTriticum turgidum31.514.8286.9669forward
CNT30590202Citrullus lanatusMusa acuminata40.189.7384.0988forward
CNT3084566Citrullus lanatusVigna radiata20.097.4790.9144forward
CNT30435838Citrullus lanatusAegilops tauschii24.6621.6992.5954forward
CNT30599410Citrullus lanatusFraxinus excelsior29.689.890.7765forward
CNT30680173Citrullus lanatusTriticum urartu24.6622.2292.5954forward
CNT30704435Citrullus lanatusPrunus avium30.149.9886.3666forward
CNT30644102Citrullus lanatusCannabis sativa27.413.7988.3360forward
CNT30319296Citrullus lanatusAsparagus officinalis31.9615.887.1470forward
CNT30118191Citrullus lanatusCitrus clementina30.146.3589.3966forward
CNT30575194Citrullus lanatusOryza barthii31.5133.6688.4169forward
CNT30115961Citrullus lanatusOryza nivara31.516.3188.4169forward
CNT30603734Citrullus lanatusOryza punctata42.017.0184.7892forward
CNT30112149Citrullus lanatusFicus carica28.317.988.7162forward
CNT3065055Citrullus lanatusSelaginella moellendorffii26.0315.4594.7457forward

Expression of CNT3019525

Peptides detected in this lncRNA

>peptide 1 (64 aa)
GRENLWHFSWHRWRRRRCRRERSQRRRSLHHRASARRWSPRSPSRRPRRRWHQGTALRCRIWLW*

>peptide 2 (72 aa)
RDVRISGISLGIGGGEDGVDENEARGDEVCTTELLHVGGALEALHDARAADGTKALHYDVEYGSGEGQFPGQE

Sequence

>CNT3019525
AGGGACGTGAGAATCTCTGGCATTTCTCTTGGCATCGGTGGCGGAGAAGACGGTGTAGACGAGAACGAAGCCAGAGGCGACGAAGTTTGCACCACCGAGC
TTCTGCACGTAGGTGGAGCCCTCGAAGCCCTTCACGACGCCCGCGCCGCAGATGGCACCAAGGCACTGCATTACGATGTAGAATATGGCTCTGGTGAGGG
ACAATTTCCTGGCCAGGAA