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Detailed information on CNT30712987


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691492Malus domestica goldenOryza sativa21.2910.0189.4776forward
CNT30515171Malus domestica goldenJuglans regia29.1311.0285.58104forward
CNT3020673Malus domestica goldenCitrullus lanatus31.6510.6384.07113forward
CNT30728378Malus domestica goldenCorchorus capsularis28.858.1984.47103forward
CNT30631135Malus domestica goldenVigna unguiculata24.937.5885.3989forward
CNT30385796Malus domestica goldenTriticum turgidum20.731885.1474forward
CNT30564991Malus domestica goldenActinidia chinensis28.292582.18101forward
CNT3085716Malus domestica goldenVigna radiata32.7737.9984.62117forward
CNT30541063Malus domestica goldenBrassica napus22.4110.0888.7580forward
CNT30658043Malus domestica goldenTriticum dicoccoides20.7327.0185.1474forward
CNT30131630Malus domestica goldenLolium perenne21.0127.9986.6775forward
CNT30609232Malus domestica goldenGossypium raimondii28.5719.2184.31102forward
CNT30646773Malus domestica goldenRosa chinensis22.1321.4186.0879forward
CNT30680472Malus domestica goldenTriticum urartu20.7310.6285.1474forward
CNT30340874Malus domestica goldenEragrostis tef18.2124.0786.1565reverse complement
CNT30573330Malus domestica goldenVitis vinifera19.3322.6285.5169forward
CNT30706529Malus domestica goldenPrunus avium42.029.7587.33150forward
CNT30328555Malus domestica goldenAsparagus officinalis19.3320.4785.5169forward
CNT30118191Malus domestica goldenCitrus clementina21.857.5185.978forward
CNT3038976Malus domestica goldenCucumis melo31.6516.5481.42113forward
CNT30115961Malus domestica goldenOryza nivara21.296.9589.4776forward
CNT30603734Malus domestica goldenOryza punctata40.0610.8982.52143forward
CNT30112244Malus domestica goldenFicus carica33.0517.8887.29118forward

Expression of CNT30712987

Peptides detected in this lncRNA

>peptide 1 (32 aa)
RCRRCCRRGRRWSRQKPKRFLESRPSCTSTST*

>peptide 2 (53 aa)
DAGGAVDEGEDGPAKSPSDSLNPDRRALRLRLDNAHHRQDCDVEEQESGGGSL*

Sequence

>CNT30712987
GAGATGCCGGCGGTGCTGTAGACGAGGGCGAAGATGGTCCCGCCAAAAGCCCAAGCGATTCCTTGAATCCCGACCGTCGTGCACTTCGACTTCGACTTGA
CAACGCCCATCACCGTCAAGATTGTGATGTAGAGGAACAGGAAAGTGGCGGTGGTTCCTTGTAGTCCTTCCCGTCGTCCTGGCTCTGAGCCGACGTCCCG
ATCGGCTGCCTCTCTGAGTACTTGTTCGCTCCCAGCCTAACATCCTCTTCCTTGCCCTCCATTATCGCTTTACGTACAAGATCAGACCAAGCAGATATCG
AGCTCTCGGTGACTGATGACCGTTGGATCTTTTTGATCTGAGAGTGTGAGGAATGGC