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Detailed information on CNT3082373


BLAST search results

BLAST vs Swiss-Prot:
sp|P45724|PAL2_ARATH, E-value = 1e-121

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691482Brassica junceaOryza sativa4.6828.6388.4169forward
CNT30189069Brassica junceaSecale cereale11.8840.5182.86175forward
CNT30239051Brassica junceaBrassica oleracea24.5157.0390.3361forward
CNT30460506Brassica junceaSaccharum spontaneum12.4976.9982.61184forward
CNT30358787Brassica junceaLactuca sativa7.1328.2386.67105forward
CNT30573621Brassica junceaVitis vinifera7.1321.8383.81105forward
CNT30107267Brassica junceaOryza longistaminata15.6193.580.87230forward
CNT30321993Brassica junceaAsparagus officinalis8.8331.6383.85130forward
CNT30592821Brassica junceaEragrostis curvula9.1663.0882.22135forward

Expression of CNT3082373

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MAALVADSGSVWHVSFVLPNIPAFKNLKRNRQITFIINK*

>peptide 2 (48 aa)
DGSLRSEGRATEERCGERNGPVSASVTDPSRGPSSLASCTSSRRGCAP*

>peptide 3 (65 aa)
MPDPTAVPLTSAKPSLGWRSKNPEAIPACWKASAAVMVPRRGRDGEMLWLRKLVIASRISNRIPE*

Sequence

>CNT3082373
GTGACGGATCACTTCGATCTGAGGGCCGAGCCACTGAGGAGAGGTGCGGAGAGCGTAACGGTCCTGTTTCGGCTTCTGTAACGGATCCATCTCGTGGACC
TTCTTCGCTAGCTTCATGTACGAGCTCCCGTCGAGGATGTGCTCCATGATCGCCGCCGCTTCGATCTGTCCGGGGTGGTGCTTCAGCCTGTGCGTCAGGT
GATCGGTGAACTCAGGCTTCCCGCTCATCACCTCCGCGAAGATCGCGGATAAGACCTCCGCCAGCACCGACTGAACGTTCGCCTCGAATAGAACCATCGA
CGCCATGCCGGATCCGACCGCCGTGCCGTTGACGAGCGCCAAGCCTTCCTTGGGCTGGAGATCGAAGAATCCGGAGGCGATTCCGGCTTGTTGGAAGGCT
TCTGCGGCGGTTATGGTTCCGCGGAGGGGGAGAGATGGAGAGATGTTGTGGTTGAGGAAGCTGGTGATCGCTTCGAGGATCTCGAATCGGATCCCGGAGT
AGCCTTGGAGGAGAGTGTTGACTCGGACGAGCATGGCGGCTCTCGTGGCGGATTCCGGTAGCGTGTGGCATGTCTCCTTCGTGTTACCGAATATTCCGGC
GTTCAAAAATCTGAAACGTAACCGCCAAATCACATTTATTATAAATAAATAAAATAAACAATAGGTAGACCCGACCTGACCCGACCGGACCCGAACCGTT
TTAATTTTTTTTTTTTTTGAATCGGTTAACCGAGCAACGTGTTTGCCATGCAATTGGAAAACCAATTCCTCGTGACTATATGCAGTGACAATTATAACGC
CCCAAATAATCTCTGCCATTTTTCCACTTAATCCACTAAATAATTAGTATTTCTCTAATTCCAACGCCAAGTTTATAAAACGAAAATCGAAAATAAAATA
GTGTTGATCACATTCCTTACGTTTTCTAATTAATTACGTGATTATTGACTAATATTGAATTTAATTAATTACCTGATGAGTTCCGTTTGCAATGCGGTGC
CGTTTTTGGTTCTCCGGTGAGAGGTAGCTCCGAACCCGGTGGTGACACCGTAACTGTCGGTACCTTTGCCCATACTCTCCATAACCCAATCGCTACTAGC
TTTCACGCCAGCCCTCGAAGCCTCCGCTAGCTCAACCTTAACTTTGCCGCCTACGGTGGAGATCGCCGCGACTTGTCCTATAGTCAGCGACTCTCCACCA
AGATTCACCACCGCCACCTTCGTCTTCTCTACTCCGCCGCACAACATGGCTTCGATCTTGCCGTTCTGGTGAACTGATCCGTTAATCTGATCCATTGGTT
TATGACCTTTGTGTTAAATATATAGGATCAGATCTTTTGAGTTGTAGGTGAAGGAAGAGAGATAGAGAGAGAGGTTTTTGAATTGTAGGTGAAGTGATTT
TGGAGCTTGTTGTGTTCCTGAGGAAGAAGAGAAGGGAGAAGATTGGTTTAAATAAGAAGACAATGAAGTAGTG