Detailed information on CNT30358787


BLAST search results

BLAST vs Swiss-Prot:
sp|O04058|PALY_HELAN, E-value = 4e-69

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691482Lactuca sativaOryza sativa19.3529.8886.1172forward
CNT3069057Lactuca sativaQuercus suber75.8165.7378.37282forward
CNT30628398Lactuca sativaVigna unguiculata43.288.5183.23161forward
CNT3096548Lactuca sativaSolanum tuberosum61.0232.7679.3227forward
CNT30239051Lactuca sativaBrassica oleracea28.2316.5984.76105forward
CNT3082373Lactuca sativaBrassica juncea28.237.1386.67105forward
CNT30364646Lactuca sativaSorghum bicolor22.317.5685.5483forward
CNT30573527Lactuca sativaVitis vinifera72.5817.6880270forward
CNT3023983Lactuca sativaPopulus trichocarpa29.310.5485.32109forward
CNT3038180Lactuca sativaCucumis melo23.928.1184.2789forward
CNT30592720Lactuca sativaEragrostis curvula22.3128.9284.3483forward

Expression of CNT30358787

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MAALVAECGSVWVDSVPLPNIPAFKNLMRD*

>peptide 2 (38 aa)
SKKPPSTPASAKAFSAFRTSPVGPTALELARPVRRPAM*

>peptide 3 (32 aa)
RRNHLQLRLPRRPFRHLELLRWVQRLWSWHGR*

Sequence

>CNT30358787
CTCGAAGAAACCACCTTCAACTCCGGCTTCCGCGAAGGCCTTTTCGGCATTTAGAACTTCTCCGGTGGGTCCAACGGCTTTGGAGTTGGCACGGCCGGTG
AGAAGACCGGCGATGTAGGATAATGGGACGAGATCGCCGGAGGCGGTAATTGTCCCACGGAGAGGGAGAAAAGGGGTGACGTTGTGGTTGAGGAACTTGG
TGATCGCCTCCAAGATCTCGAATCGGATGCCGGAGTAACCTTGAAGGAGGGTGTTGATTCTGACAAGCATGGCTGCTCTTGTGGCTGAATGTGGAAGTGT
GTGGGTTGATTCTGTGCCATTACCGAATATTCCGGCGTTCAAGAATCTAATGAGGGATTGAAGGTGGTGAAG