Detailed information on CNT30239051


BLAST search results

BLAST vs Swiss-Prot:
sp|P45724|PAL2_ARATH, E-value = 6e-104

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691482Brassica oleraceaOryza sativa10.928.6389.8669forward
CNT30373595Brassica oleraceaArabidopsis thaliana28.5933.7182.87181forward
CNT3082373Brassica oleraceaBrassica juncea57.0324.5190.3361forward
CNT30460506Brassica oleraceaSaccharum spontaneum10.7428.4588.2468forward
CNT30358787Brassica oleraceaLactuca sativa16.5928.2384.76105forward
CNT30321993Brassica oleraceaAsparagus officinalis15.9624.5785.15101forward
CNT30592720Brassica oleraceaEragrostis curvula9.6421.2588.5261forward

Expression of CNT30239051

Peptides detected in this lncRNA

>peptide 1 (57 aa)
MPDPTAVPLTSAKPSLGCRSKNPEVIPAFLKASSAVRDSPLGPVALEFGRPVRRPAM*

>peptide 2 (31 aa)
RNGLVSVFVTDPSREAFALASCTSFRRGCAP*

>peptide 3 (41 aa)
MLWLRRLVIASRISNRIPEYPWRSVLTRTSMAALVADSGSV*

Sequence

>CNT30239051
CGCGTAACGGTCTTGTTTCGGTTTTTGTAACGGATCCATCTCGTGAAGCTTTTGCGCTAGCTTCATGTACGAGCTTCCGTCGAGGATGTGCTCCATGATC
GCCGCCGCTTCGATCTGTCCGGGGTGATGTTTGAGTCGGTGAGTCAAATGATCGGTGAACTCCGGCTTCCCGCTCATCACCTCCGCGAAGATCGCGGATA
AAACCTCGGCGAGGACCGATTGAACATTCGCTTCGAAGAGAACCATCGACGCCATGCCGGATCCAACCGCCGTGCCGTTGACGAGCGCTAAGCCTTCCTT
AGGCTGTAGATCGAAGAATCCGGAAGTGATTCCGGCTTTCTTGAAGGCTTCTTCGGCGGTTAGGGATTCACCGTTGGGACCGGTGGCTTTGGAGTTCGGA
CGGCCGGTGAGGAGACCTGCGATGTAGGAGAGGGGGACGAGATCGCCGGAGGGGGAGAGACGGAGAGATGTTGTGGTTGAGGAGGCTGGTGATCGCTTCG
AGGATTTCGAATCGGATCCCGGAGTATCCTTGGAGGAGTGTGTTGACTCGGACGAGCATGGCGGCTCTCGTGGCGGATTCCGGTAGCGTGTGACATGTCT
CCTTCGTGTTCCCGAAGATTCCGGCGTTCAAAA