Detailed information on CNT30189069


BLAST search results

BLAST vs Swiss-Prot:
sp|Q0DZE0|PAL2_ORYSJ, E-value = 2e-69

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691552Secale cerealeOryza sativa22.4511.0994.8597forward
CNT30533290Secale cerealeEucalyptus grandis5018.0682.87216forward
CNT30628474Secale cerealeVigna unguiculata21.5313.8284.9593forward
CNT30636617Secale cerealeCapsicum annuum42.8214.2179.46185forward
CNT30226002Secale cerealeHordeum vulgare28.4741.5584.55123forward
CNT3082373Secale cerealeBrassica juncea40.5111.8882.86175forward
CNT30460506Secale cerealeSaccharum spontaneum55.3210086.19239forward
CNT30329354Secale cerealeDioscorea rotundata50.6924.7781.28219forward
CNT30149709Secale cerealeBrachypodium distachyon16.924.3389.0473forward
CNT30100429Secale cerealeOryza rufipogon23.157.3793100forward
CNT30592821Secale cerealeEragrostis curvula24.0748.685.58104forward
CNT3040161Secale cerealeMarchantia polymorpha24.547.3785.85106forward

Expression of CNT30189069

Peptides detected in this lncRNA

>peptide 1 (58 aa)
MARRVLSMETPMGVPWKLPPWMALPRETSMSGLSLTELISRSIDLVAKRITSICGPSH*

>peptide 2 (63 aa)
ELQLGAVRGHGDLGALETIVQARVASTGQVGRQQWRGGCCPWRHQWGCLGSCHHGWPCHGRRR*

>peptide 3 (67 aa)
MDGLATGDVDERVVVDRVDLTLNRLGGKANNFDLWAEPLRRCAEGIPVLLRLHQRVELAKLLCLLHV*

>peptide 4 (35 aa)
MCGGHTGPASASSTGRARQASLPASCMSFPPRCAP*

Sequence

>CNT30189069
AGAACTGCAGCTCGGAGCAGTACGAGGCCATGGCGATCTCGGCGCCCTTGAAACCATAGTCCAAGCTCGGGTTGCGTCCACCGGACAGGTTGGAAGGCAG
CAATGGCGAGGCGGGTGTTGTCCATGGAGACACCAATGGGGGTGCCTTGGAAGTTGCCACCATGGATGGCCTTGCCACGGGAGACGTCGATGAGCGGGTT
GTCGTTGACAGAGTTGATCTCACGCTCAATCGACTTGGTGGCAAAGCGAATAACTTCGATTTGTGGGCCGAGCCACTGAGGCGATGTGCGGAGGGCATAC
CGGTCCTGCTTCGGCTTCATCAACGGGTCGAGCTCGCCAAGCTTCTTTGCCTGCTTCATGTATGAGCTTCCCTCCAAGATGTGCTCCATGATTGCAGCCG
CTTCTATCTGTCCAGGGTGGTGCTTCAACTTG