« Back to Asparagus officinalis search


Detailed information on CNT30321993


BLAST search results

BLAST vs Swiss-Prot:
sp|A0A2H5AIY6|PAL2_NARPS, E-value = 6e-39

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691482Asparagus officinalisOryza sativa15.0925.7393.5562forward
CNT30239051Asparagus officinalisBrassica oleracea24.5715.9685.15101forward
CNT3082373Asparagus officinalisBrassica juncea31.638.8383.85130forward
CNT30135452Asparagus officinalisLolium perenne32.3635.8583.46133forward
CNT30364646Asparagus officinalisSorghum bicolor37.4714.0385.06154forward
CNT30592720Asparagus officinalisEragrostis curvula34.5549.4884.51142forward

Expression of CNT30321993

Peptides detected in this lncRNA

>peptide 1 (58 aa)
MRTSIAARVAEVDSMLPDSLPEPKIPAFRNLKQRRSHQNFDLCVCARINLIVISSKIGV

>peptide 2 (55 aa)
MVPRRGRQGVMLALRKERGTRSPEEEMVPRRGRQGVMLALRKEVMASRISKRMPE*

Sequence

>CNT30321993
AGCATTCCGGCGATGTAGGAGAGAGGGACAAGGTCGCCGGAGGAGGAGATGGTTCCTCGGAGGGGTAGGCAGGGCGTGATGTTGGCGTTGAGGAAGGAGA
GAGGGACAAGGTCGCCGGAGGAGGAGATGGTTCCTCGGAGGGGTAGGCAGGGCGTGATGTTGGCGTTGAGGAAGGAGGTGATGGCTTCCAGGATTTCGAA
GCGGATGCCGGAGTAGCCCTGGAGGAGGGTGTTGATGCGGACGAGCATTGCGGCTCGAGTGGCAGAGGTCGACAGCATGTTACCGGATTCTCTGCCGGAG
CCGAAGATTCCGGCGTTTAGGAATCTGAAGCAAAGAAGATCTCATCAGAATTTTGACTTGTGTGTGTGCGCGCGCATCAACCTTATTGTTATTAGTTCAA
AAATAGGAGTT