Detailed information on CNT30460506


BLAST search results

BLAST vs Swiss-Prot:
sp|Q43210|PALY_WHEAT, E-value = 3e-47

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30628474Saccharum spontaneumVigna unguiculata30.1310.786.1172forward
CNT30189069Saccharum spontaneumSecale cereale10055.3286.19239forward
CNT30239051Saccharum spontaneumBrassica oleracea28.4510.7488.2468forward
CNT3082373Saccharum spontaneumBrassica juncea76.9912.4982.61184forward
CNT30107267Saccharum spontaneumOryza longistaminata77.8275.6183.87186forward
CNT30329128Saccharum spontaneumDioscorea rotundata97.499.1778.54233forward
CNT30592821Saccharum spontaneumEragrostis curvula45.1950.4790.74108forward

Expression of CNT30460506

Peptides detected in this lncRNA

>peptide 1 (78 aa)
RVVVDGVDLALNGLGGGTDNLNLGAKPLRRRAERVSVLLRLHQRVELAELLGQLHVRAAFQDVLHDGGSLDLSGVVLQL

>peptide 2 (78 aa)
GLSLTELISRSMDLVAARITSIWGPSHCGDVRSAYLSCFGFISGSSSPSFLASFMYELPSKMCSMMAAASICPGWCFSL

Sequence

>CNT30460506
GCGGGTTGTCGTTGACGGAGTTGATCTCGCGCTCAATGGACTTGGTGGCGGCACGGATAACCTCAATCTGGGGGCCAAGCCACTGCGGCGACGTGCGGAG
CGCGTATCTGTCCTGCTTCGGCTTCATCAGCGGGTCGAGCTCGCCGAGCTTCTTGGCCAGCTTCATGTACGAGCTGCCTTCCAAGATGTGCTCCATGATG
GCGGCAGCCTCGATCTGTCCGGGGTGGTGCTTCAGCTTG