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Detailed information on CNT3078045


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30518318Brassica junceaJuglans regia22.3413.3194.0584forward
CNT30698018Brassica junceaQuercus lobata21.8113.5195.1282forward
CNT30500546Brassica junceaCoffea canephora21.8117.7192.6882forward
CNT3070411Brassica junceaQuercus suber21.8113.8395.1282forward
CNT30194705Brassica junceaPisum sativum21.0114.3193.6779forward
CNT30708301Brassica junceaGlycine max20.7412.0494.8778forward
CNT3043428Brassica junceaPrunus dulcis21.2817.8693.7580forward
CNT30163346Brassica junceaPistacia vera20.7411.7894.8778forward
CNT30261401Brassica junceaBrassica rapa95.7440.6388.33360forward
CNT30626608Brassica junceaDaucus carota21.019.2992.4179forward
CNT30154619Brassica junceaPrunus persica21.2819.793.7580forward
CNT30423745Brassica junceaPapaver somniferum22.3417.595.2484forward

Expression of CNT3078045

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MDPQLTLNLYLSNQIFINNAIILQMLILV*

Sequence

>CNT3078045
AGAGTTGAGCACCCTTTCATCTTCTTGCTACCGTCACCGGGAAACAGCCGACTAGTGTTTCGAGAAAAAAGAGCTCATACGCCATGAGAGCCAAGTGGAA
GAAGAAGCGTATGAGGAGGTTGAAGAGGAAGAGACGAAAGATGAGACAGCGATCTAAGTAGAGAGACTCTTCTTGAAGACTTCGCTTTCCAGTCATTTCA
TTTCGCTAAGTACTTTTGTTTGGATCTTGTTTCAGTTCCAACTGTTCTTGTTTTCGTTTTTGTCGGATTGTATGGATCCTCAGTTAACGTTAAATCTTTA
TCTTTCTAATCAGATTTTCATTAATAATGCTATTATCTTGCAAATGCTAATCCTCGTATAGATCTTATGTATTATC