Detailed information on CNT309411


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678059Zea maysSetaria viridis18.3320.3390110forward
CNT30446643Zea maysSaccharum spontaneum26.3332.6488.61158forward
CNT30137004Zea maysLolium perenne14.537.1890.887forward
CNT30579574Zea maysEchinochloa crusgalli1923.0391.23114forward

Expression of CNT309411

Peptides detected in this lncRNA

>peptide 1 (59 aa)
MNQRREGWPQNQVRLQLTSTQPPQSGGQVARARAPPAPTRCGPSGRRRGCGGSRGSAGK*

>peptide 2 (39 aa)
MLDVLSSALVSSALPIFWFLLFSWLCFLLIYALLSGSLCA

>peptide 3 (36 aa)
MSFLQRWSVLLSPSFGSYCSLGFVSCSSMLSCQVLYA

>peptide 4 (39 aa)
QPSTRASRLGFPISTRTPGSIYEPEARGVAAESGPSPTH*

Sequence

>CNT309411
CTCAGCCGTCCACGAGAGCATCACGGCTAGGGTTTCCGATTTCAACTAGGACCCCTGGATCTATATATGAACCAGAGGCGAGAGGGGTGGCCGCAGAATC
AGGTCCGTCTCCAACTCACTAGTACTCAGCCGCCGCAATCAGGGGGGCAGGTAGCTCGAGCGCGCGCTCCACCTGCGCCGACGCGATGCGGGCCAAGTGG
AAGAAGAAGAGGATGCGGAGGCTCAAGAGGAAGCGCCGGAAAATGAGGCAGAGATCTAAGTAGGCGCATCTTGTGACCGAGGATGGCGAGCTTCTCCTGC
ACCATGGCTGTGACGCGTTGGGATGATTGTCTCCCTTTGTAGACGTGCTTTGCTGTAGACGTAGGCGATGTAAACCGTCCTTTTTGATTAATTCTAGTAT
GTTCTGAGACTGGGTTTATATTGTAATTTGAGGATAATTATATGATGCTCTAAGTTTATTGATATTCCTGTCACTCGAATATGTTAGATGTCCTTTCTTC
AGCGTTGGTCAGTTCTGCTCTCCCCATCTTTTGGTTCCTACTGTTCTCTTGGCTTTGTTTCCTGCTCATCTATGCTCTCCTGTCAGGTTCTCTATGCGCC