Detailed information on CNT30341608


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678059Eragrostis tefSetaria viridis17.3820.1598.17109forward
CNT30395161Eragrostis tefTriticum turgidum14.6725.8497.8392forward
CNT3024433Eragrostis tefPopulus trichocarpa13.5624.2991.7685forward

Expression of CNT30341608

Peptides detected in this lncRNA

>peptide 1 (63 aa)
KSEPSPPHIASRPNSKHRRHRKPRARARAPPRRRDEGQVEEEENEEAQEEAPKDEAEIQVGAP*

>peptide 2 (60 aa)
RRASRRRHTSRPAPTRNTAATASRELERELHPAAAMRAKWKKKRMRRLKRKRRKMRQRSK*

>peptide 3 (41 aa)
MLFVYFDHQRNSIGLCFMDYFRPVSVSVVAKIWFNRNGWFTE

>peptide 4 (35 aa)
EERAVAATHRVPPQLETPPPPQAESSSASSTPPPR*

>peptide 5 (33 aa)
MRKDCSHLDHAFGVSRRFLIRRLELGVVNLLGF*

Sequence

>CNT30341608
AGAAGAGCGAGCCGTCGCCGCCACACATCGCGTCCCGCCCCAACTCGAAACACCGCCGCCACCGCAAGCCGAGAGCTCGAGCGCGAGCTCCACCCCGCCG
CCGCGATGAGGGCCAAGTGGAAGAAGAAGAGAATGAGGAGGCTCAAGAGGAAGCGCCGAAAGATGAGGCAGAGATCCAAGTAGGTGCTCCATGAGGAAGG
ATTGCAGTCACCTAGATCATGCCTTTGGTGTGTCAAGACGATTCCTGATACGCCGGCTTGAGCTGGGAGTTGTGAACCTTCTTGGGTTTTAGCAATTTTA
GCTCTTTAAGAGTCTGGTCATGTTCTACGACTGGGTTTATGTAATGTGAGGATAATCATATGTTGCTTTATAACTGGGAGATCAGTTAAGTGAGATTTCT
GGTACTGGAATATAATTCTTGTCTGGATGAATGTTTCATGTAAACTCAGTTAGCTGATCGTGGCCTAAGCTTGTCCCTATCGGTGAATCTATGTGATGGA
TGCTGTTTGTGTATTTCGACCATCAACGGAATAGTATTGGTCTATGTTTTATGGACTATTTTAGGCCTGTCAGTGTTAGTGTTGTTGCCAAAATTTGGTT
CAATAGAAATGGTTGGTTTACTGAGCA