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Detailed information on CNT30257903


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9MTM8|PSBM_OENEH, E-value = 1e-07

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676604Avena sativaSetaria viridis38.3827.2686.86274reverse complement
CNT30293440Avena sativaTriticum aestivum25.3546.4194.48181reverse complement

Expression of CNT30257903

Peptides detected in this lncRNA

>peptide 1 (42 aa)
GEEARSNTHSHKAPLLRFFILHLSLKREGKHIGIFFFTTPDR*

Sequence

>CNT30257903
GGGGAGGAAGCAAGATCAAATACCCATAGCCATAAGGCACCCTTACTTCGCTTTTTTATTTTGCATCTCTCATTAAAGAGGGAGGGGAAGCATATAGGCA
TTTTTTTTTTCACTACTCCCGATCGATAAAGAAAGACACACATATGATATAGAATACCGCTATTTTATCGGAATCCATACATAAATAGTATTCCCTTTTT
ATTTAAGATCTCTTTTACCCATGTCAGTTCTACTGCTTATTTGGATGTCCATGTGACCCATATAAAGTTGGTCATATAATACATACATACATAATTGTAT
GTATAAATATAATAAAAAGGAAGGGAAATTGGATAAGATTAAGAAAGATCATGGGTTAGAGGTATAGAAAAGAAAAAGGAGAAAAGGATTAAAAAAAGAA
AAGAGGGAATTCCTAATCCAATCAAAAAAACCATTTTGGTCTTAGTATGGATAAAGGGTCTTCCTATGTTATAGTATTCCCCTCTCAACTATGAATTGAT
TTGATAGATCCGATATTCATAATATTGAATTGATTCAGTATTATCAGACTGCAAGCTCTACCCTTGAATTTACAGGATACCCCTTTTTCCTCCCCATGGG
ATTATATCCCCAGTTATTGTGAAAATAAAAAATAAAGAGGTTATGGAAGTCAATATTCTCGCATTTATTGCTACTGCACTGTTCATTCTAGTTCCTACTG
CTTTTTTACTTATT