Detailed information on CNT30184977


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673030Secale cerealeSetaria viridis54.543.8481.82121forward
CNT30304204Secale cerealeTriticum aestivum99.5596.9398.19221forward
CNT30565287Secale cerealeActinidia chinensis72.9748.885.19162forward
CNT30726082Secale cerealeLupinus angustifolius55.8627.5684.68124forward

Expression of CNT30184977

Peptides detected in this lncRNA

>peptide 1 (72 aa)
LGLVTALAAQDAPLHCSSEGNSLIRVDTLVWLLAVKVVPEELLDLGNPGAATNKNNLVDLGLLEASNHTSILC

>peptide 2 (36 aa)
LVSSPPSPLKMLPCTAAPKATASSGLTPLFGSLPSK*

Sequence

>CNT30184977
CCTTGGTCTCGTCACCGCCCTCGCCGCTCAAGATGCTCCCCTGCACTGCAGCTCCGAAGGCAACAGCCTCATCAGGGTTGACACCCTTGTTTGGCTCCTT
GCCGTCAAAGTAGTCCCTGAGGAGCTGCTGGACCTTGGGAATCCTGGTGCTGCCACCAACAAGAACAATCTCGTGGATCTGGGTCTTCTCGAGGCCAGCA
ATCACACCAGCATCCTTTGTCG