Detailed information on CNT30161017


BLAST search results

BLAST vs Swiss-Prot:
sp|P27322|HSP72_SOLLC, E-value = 3e-21

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697339Pistacia veraOryza sativa57.9630.984.73131forward
CNT30673030Pistacia veraSetaria viridis44.2536.2387100forward
CNT30522780Pistacia veraSetaria italica24.786.6391.0756forward
CNT30225079Pistacia veraHordeum vulgare37.6131.3785.8885forward
CNT30568743Pistacia veraActinidia chinensis57.9641.9985.5131forward
CNT30510956Pistacia veraSolanum lycopersicum61.9552.4386.43140forward
CNT30145283Pistacia veraMedicago truncatula46.4630.6185.71105forward
CNT30451043Pistacia veraSaccharum spontaneum43.8111.6286.8799forward
CNT304854Pistacia veraZea mays57.9659.2885.5131forward
CNT30578217Pistacia veraOryza barthii43.8122.0591.9299forward

Expression of CNT30161017

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MTPPAVSNPRDRGVTSKSNKSCTFSLPSPLKMAA*

>peptide 2 (74 aa)
WVILKYLFPLGGYCCVSWDQNSHDTSCSFQPKGQRGNIQKQQVLHLLVALSTQDGSLNSSTICNSLIRINVLAKL

Sequence

>CNT30161017
CTGGGTAATTCTAAAATACTTGTTCCCTCTTGGTGGGTACTGTTGTGTTTCTTGGGATCAAAACAGTCATGACACCTCCTGCAGTTTCCAACCCAAGGGA
CAGAGGGGTAACATCCAAAAGCAACAAGTCCTGCACCTTCTCGTTGCCCTCTCCACTCAAGATGGCAGCCTGAACAGCAGCACCATATGCAACAGCCTCA
TCCGGATTAATGTACTTGCAAAGCTC