« Back to Triticum dicoccoides search


Detailed information on CNT30665140


BLAST search results

BLAST vs Swiss-Prot:
sp|P12329|CB21_MAIZE, E-value = 2e-127

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696035Triticum dicoccoidesOryza sativa62.8658.2489.73594forward
CNT30393694Triticum dicoccoidesTriticum turgidum93.9791.7498.54888forward
CNT30555055Triticum dicoccoidesOryza glaberrima62.5454.8290.19591forward
CNT30251349Triticum dicoccoidesAvena sativa69.4265.3493.9656forward
CNT30472898Triticum dicoccoidesSaccharum spontaneum61.959.8891.11585forward
CNT30345513Triticum dicoccoidesEragrostis tef63.2864.4490.64598forward
CNT30596901Triticum dicoccoidesOryza meridionalis57.5755.7991.73544forward
CNT30103289Triticum dicoccoidesOryza rufipogon62.5453.9790.19591forward

Expression of CNT30665140

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MQHLSVRTTQSHNGKKQRSTTTHMQQHPSAMKLSA*

>peptide 2 (29 aa)
MAQRQWITSSSRFLAKVSGSAERPAVSQP*

>peptide 3 (37 aa)
MVMRPSPKGAALEAFTGVPAIAGEESAMVAAAIANFE*

Sequence

>CNT30665140
TTAAGCAGAAGAACAGAGATGCCTTGATTAATCTGAGAAAATAGCCAGATATTACACAAACACCATCTTGTAGTGTACACACACCAACTCCTCATCTCGA
CTCGCGCTCACATGCAACATCTATCAGTCCGGACTACTCAATCTCACAACGGGAAGAAGCAGAGATCGACGACGACACACATGCAGCAGCATCCATCAGC
CATGAAGTTGTCGGCCTAGAGGTTGAGCTGACCGCGCTCACTTGCCGGGGACGAAGTTGGTGGCGAAGGCCCAGGCGTTGTTGTTGACGGGGTCGGCGAG
GGGGTCGAAGCTGCCGCCGGGGTAGAGCGGGTCCACGATCTCGCCGAGCGGGCCGCCGGCGACGCGGTAGCCCTCCACGGCGCCCATGAGCACCACCTGG
CAGGCCCAGATGGCGAGGATGCTCTGCGCGTGCACCAGGCTGGGGTTGCCGAGGTAGTCGAGGCCGCCCTCGCTGAAGATCTGGGAGCCGGCCTTGAACC
ACACGGCCTCGCCGAACTTGACGCCGTTGCGGGCGAGCAGCTCCGGGAAGACGCAGCCGAGCGCGCCGAGCATGGCCCAGCGGCAGTGGATCACCTCCAG
CTCCCGGTTCTTGGCGAAGGTCTCGGGGTCGGCGGAGAGGCCCGCGGTGTCCCAGCCGTAGTCGCCGGGGAACTCGCCGGTGAGGTAGCTCGGGGGGTCG
CCGGAGAGCGGGCCGAGGTAGAGCACGCGGTCGGAGCCGTACCACGGGCTGCTGGACGCCGCCACCTTGGGCTTGCCCGCCGTCTTGCGCATGGTGATGC
GGCCCTCCCCGAAGGGCGCCGCCCTGGAGGCCTTCACCGGGGTGCCGGCCATCGCCGGGGAGGAGAGCGCCATGGTCGCGGCCGCCATTGCTAACTTCGA
GTGAGCTGAGGCTGACAGTAGGAGGCGCTGGTGGTCGTTGGTGAC