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Detailed information on CNT30596901


BLAST search results

BLAST vs Swiss-Prot:
sp|P12330|CB21_ORYSJ, E-value = 3e-116

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30641294Oryza meridionalisNymphaea colorata53.3351.3386.92520forward
CNT30186790Oryza meridionalisSecale cereale46.9748.7291.48458forward
CNT30393694Oryza meridionalisTriticum turgidum55.7956.290.81544forward
CNT30555055Oryza meridionalisOryza glaberrima70.4663.7395.63687forward
CNT30251349Oryza meridionalisAvena sativa54.4652.8990.96531forward
CNT30665140Oryza meridionalisTriticum dicoccoides55.7957.5791.73544forward
CNT30472898Oryza meridionalisSaccharum spontaneum54.6754.5593.81533forward
CNT30345516Oryza meridionalisEragrostis tef50.2665.8692.24490forward

Expression of CNT30596901

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MRYPSTAPMSTTCTAQMARMLCAWIRLGLPR*

>peptide 2 (31 aa)
YVFRLYYIIRMVIFWDRWSICFQPNRDDQIR*

>peptide 3 (37 aa)
MIKSANQNNGQISTKTISWETNKIIIAKTSSSSSSSS*

Sequence

>CNT30596901
TATGTATTTAGACTATACTACATAATCAGAATGGTTATATTTTGGGATCGATGGAGTATTTGTTTCCAACCTAATAGAGATGATCAAATCCGCTAATCAG
AATAACGGACAGATAAGTACCAAGACCATCAGTTGGGAAACGAATAAAATCATTATTGCAAAAACATCATCTTCATCTTCTTCTTCTTCTTAGTGTACAC
AACACCAACTCGATCATCATCTCGTCGCACCAAACCCATCTTCCCCAACCCAAAGACAACGAACTCGCTGGCCACAAATCCATTTCAACTACGCTCCCCT
CTCACTTGCCGGGGACGAAGTTGGTGGCGTACGCCCAGGCGTTGTTGTTGACGGGGTCGGCGAGGCCGAGCGGGTCGAAGGCGCCGCCGGGGTAGAGCGG
GTCGACGACCTCGCCGAGCGGGCCGCCGGCGATGCGGTACCCCTCGACGGCGCCCATGAGCACCACCTGCACCGCCCAGATGGCGAGGATGCTCTGCGCG
TGGATCAGGCTCGGGTTGCCGAGGTAGTCGAGCCCCCCCTCGCTGAAGATCTGCGAGCCCGCCTTGAACCACACGGCCTCGCCGAACTTGACGCCGTTCC
GGGCGAGGAGCTCCGGGAAGACGCAGCCGAGCGCGCCCAGCATCGCCCACCGGGAGTGGATCACCTCCAGCTCCCGGTTCTTGGCGAACGTCTCCGGGTC
GGCGGAGAGCCCCGCGGTGTCCCAGCCGTAGTCGCCCGGGAACTCGCCGGTGAGGTAGCTCGGCGGCTCGCCGGAGAGCGGGCCGAGGTAGAGGACGCGG
TCGGCGCCGTACCACGGGCTCCCCGACGCCGCCGGCTTGGGCTTCGCGGCGGAGGTCGACGGCGCCGCGCGGGCCATCACCGGGGAGGAGAGCGCCATGG
TGGCCGCGGCCATTGATGCACTGAGCTGTGAGAGCTGAGAGAGATGGCGATGAGCGAGAGTGAGTTGGGAGTTGG