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Detailed information on CNT30696035


BLAST search results

BLAST vs Swiss-Prot:
sp|P12330|CB21_ORYSJ, E-value = 5e-129

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30641322Oryza sativaNymphaea colorata51.1853.9886.78522forward
CNT30555055Oryza sativaOryza glaberrima77.8473.6599.37794forward
CNT30251349Oryza sativaAvena sativa57.5558.4789.1587forward
CNT30665140Oryza sativaTriticum dicoccoides58.2462.8689.73594forward
CNT30472898Oryza sativaSaccharum spontaneum57.8460.3992.2590forward
CNT30345513Oryza sativaEragrostis tef58.6364.4489.8598forward
CNT30103289Oryza sativaOryza rufipogon84.2278.4599.65859forward

Expression of CNT30696035

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MVIRASPKSAEEVDGAARAITGEESAMVAAAIDAVSCES*

>peptide 2 (33 aa)
LVGKRIKSLLQKHHLLLHLLSVHNTNSIIISSH*

>peptide 3 (31 aa)
MRYPSTAPMSTTCTAQMARMLCAWIRLGLPR*

Sequence

>CNT30696035
ATTAGTTGGGAAACGAATAAAATCATTATTGCAAAAACATCATCTTCTTCTTCATCTTCTTAGTGTACACAACACCAACTCGATCATCATCTCGTCGCAC
TAAACCCATCTTCCCCAACCCAAAGACAACGAACTCGCTGGCCACAAATCCATCCAACCACAATTAACCACTGCTAAGCTACGGTCCCCCACTTCACTTG
CCGGGGACGAAGTTGGTGGCGTACGCCCAGGCGTTGTTGTTGACGGGGTCGGCGAGGTGGCCGAGCGGGTCGAAGGCGCCGCCGGGGTAGAGCGGGTCGA
CGACCTCGCCGAGCGGCCCGCCGGCGATGCGGTACCCCTCGACGGCGCCCATGAGCACCACCTGCACCGCCCAGATGGCGAGGATGCTCTGCGCGTGGAT
CAGGCTCGGGTTGCCGAGGTAGTCGAGCCCGCCCTCGCTGAAGATCTGCGAGCCCGCCTTGAACCACACGGCCTCGCCGAACTTGACGCCGTTCCGGGCG
AGGAGCTCCGGGAAGACGCAGCCGAGCGCGCCCAGCATCGCCCACCGGGAGTGGATCACCTCCAGCTCCCGGTTCTTGGCGAACGTCTCCGGGTCGGCGG
AGAGCCCCGCGGTGTCCCACCCGTAGTCGCCCGGGAACTCGCCGGTGAGGTAGCTCGGCGGCTCGCCGGAGAGCGGGCCGAGGTAGAGGACGCGGTCGGC
GCCGTACCACGGGCTCCCCGACGACGCCGCCGGCTTGGGCTTCGCGGCGGTCTTGCGCATGGTGATCCGCGCCTCGCCGAAGAGCGCGGAGGAGGTCGAC
GGCGCCGCGCGGGCCATCACCGGGGAGGAGAGCGCCATGGTGGCCGCGGCCATTGATGCAGTGAGCTGTGAGAGCTGAGAGAGATGGCGATGAGCGAGCG
AGTGTGAGTTGGGAGTTGGAGATGGCGCGGGAGTTTAAATAGCGCGGGAAGTGAGGGGGGATCGAGTCCTTATCTTGGGAAATCTAAAGGCGGCTCGCGA
TTGGCGCTCGCGCGTGGGGC