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Detailed information on CNT30472898


BLAST search results

BLAST vs Swiss-Prot:
sp|P27497|CB29_MAIZE, E-value = 3e-132

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696035Saccharum spontaneumOryza sativa60.3957.8492.2590forward
CNT30641294Saccharum spontaneumNymphaea colorata53.7451.8387.24525forward
CNT30186674Saccharum spontaneumSecale cereale53.6356.190.65524forward
CNT30298862Saccharum spontaneumTriticum aestivum53.6352.0991.41524forward
CNT30393694Saccharum spontaneumTriticum turgidum59.8860.4391.11585forward
CNT30555055Saccharum spontaneumOryza glaberrima60.0854.4592.67587forward
CNT30251349Saccharum spontaneumAvena sativa53.8452.3992.4526forward
CNT30665140Saccharum spontaneumTriticum dicoccoides59.8861.991.11585forward
CNT30345513Saccharum spontaneumEragrostis tef61.1164.3391.62597forward
CNT30596901Saccharum spontaneumOryza meridionalis54.5554.6793.81533forward
CNT30369293Saccharum spontaneumOryza glumipatula54.6656.5191.95534forward
CNT30103289Saccharum spontaneumOryza rufipogon60.0853.6192.67587forward

Expression of CNT30472898

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MAQREWITSSSRFLANVSGSADSPAVSQP*

>peptide 2 (46 aa)
DIFTLVTVRIARRMPCRSPVTTKSHPEKLSKIQRPSSDQTPDFSGK*

>peptide 3 (31 aa)
MRYPSTAPMSTTWTAQMARMLCAWIRLGLPR*

Sequence

>CNT30472898
AGATATTTTTACTCTAGTCACTGTAAGGATCGCTAGAAGAATGCCTTGCAGAAGCCCTGTGACCACAAAATCACACCCAGAAAAGTTGAGCAAAATTCAG
CGGCCCTCTTCTGATCAAACACCCGATTTTTCAGGCAAATAAAATCGACAGTGATGAATGAAAAAGGAAAAAAAATGAGTCGTATTGGACGCGGCGCGAG
ATAATGATTAATGAACACAATTATTCCTTCTTGATTGAACCCTGGTAATTTACATCATGGTACAAACTGAAACCAGTGCGCGCTCAGGTGCATCCGGACA
CCTCCTTCACTTGCCGGGCACGAAGTTGGTGGCGTAGGCCCAGGCGTTGTTGTTGACGGGGTCGGCGAGGCCGAGCGGGTCGAAGCTGCCGCCGGGGTAG
AGCGGGTCGACGACCTCGCCGAGCGGGCCGCCGGCGATGCGGTACCCCTCGACGGCGCCCATGAGCACGACCTGGACGGCCCAGATGGCGAGGATGCTCT
GCGCGTGGATCAGGCTCGGGTTGCCCAGGTAGTCCAGCCCGCCCTCGCTGAAGATCTGTGACCCGGCCTTGAACCACACGGCCTCGCCGAACTTGACGCC
GTTGCGGGCGAGCAGCTCGGGGAACACGCAGCCGAGCGCGCCCAGCATGGCCCAGCGGGAGTGGATCACCTCCAGCTCCCGGTTCTTGGCGAACGTCTCG
GGGTCCGCGGACAGCCCGGCCGTGTCCCAGCCGTAGTCGCCGGGGAACTCGCCCGTCAGGTAGCTCGGGGGCTCGCCGGAGAGCGGGCCCAGGTAGAGCA
CGCGGTCGGGGCCGTACCACGGGCTGCCGGACGCCGCCGCCGGCTTGGCCTTCGCCGCCGTCTTGCGCATCGTCACGCGGGCCTCGCCGAACAGGGACGA
CGGCACGTTCACGGCCTTGCCGGCGAAGGCCGTGGAGGAGAGGGCCATGGTGCTGCTCGCCATTGCGCTGCTTCTGC