CANTATAdb - search

Detailed information on CNT30555055

BLAST search results

BLAST vs Swiss-Prot:
sp|P12330|CB21_ORYSJ, E-value = 3e-120

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30696035	Oryza glaberrima	Oryza sativa	73.65	77.84	99.37	794	forward
CNT30393694	Oryza glaberrima	Triticum turgidum	54.82	61.05	89.51	591	forward
CNT30251349	Oryza glaberrima	Avena sativa	54.17	58.17	89.55	584	forward
CNT30665140	Oryza glaberrima	Triticum dicoccoides	54.82	62.54	90.19	591	forward
CNT30472898	Oryza glaberrima	Saccharum spontaneum	54.45	60.08	92.67	587	forward
CNT30596901	Oryza glaberrima	Oryza meridionalis	51.39	56.82	98.92	554	forward
CNT30370980	Oryza glaberrima	Oryza glumipatula	61.41	90.19	98.79	662	forward
CNT30103289	Oryza glaberrima	Oryza rufipogon	91	89.59	99.49	981	forward

Expression of CNT30555055

Peptides detected in this lncRNA

>peptide 1 (44 aa)
YCIRKFKVLINPSMPQYKQFNYIFTLYIARNGYILGSREYLFLI*

>peptide 2 (31 aa)
MRYPSTAPMSTTCTAQMARMLCAWIRLGLPR*

Sequence

>CNT30555055
CTATTGTATACGTAAATTTAAAGTACTAATTAATCCTTCCATGCCACAATATAAACAATTTAACTACATATTTACACTATACATAGCCAGAAATGGTTAT
ATTTTGGGATCGAGGGAGTATTTGTTTCTGATCTAATAGAGATGAGAAATCCGCTAATCAGAATAACACCACGGATAAGTACCTAGACCATTAGTTGGGA
AACAAATAAAATCATTATTGCAAAAACATCATCTTCTTCTTCATCTTCTTAGTGTACACAACACCAACTCGATCATCATCTCGTCGCACTAAACCCATCT
TCCCCAACCCAAAGACAACGAACTCGCTGGCCACAAATCCATCCAACCACAATTAACCACTGCTAAGCTACGGTGCCCCACTTCACTTGCCGGGGACGAA
GTTGGTGGCGTACGCCCAGGCGTTGTTGTTGACGGGGTCGGCGAGGCCGAGCGGGTCGAAGGCGCCGCCGGGGTAGAGCGGGTCGACGACCTCGCCGAGC
GGCCCGCCGGCGATGCGGTACCCCTCGACGGCGCCCATGAGCACCACCTGCACCGCCCAGATGGCGAGGATGCTCTGCGCGTGGATCAGGCTCGGGTTGC
CGAGGTAGTCGAGCCCGCCCTCGCTGAAGATCTGCGAGCCCGCCTTGAACCACACGGCCTCGCCGAACTTGACGCCGTTCCGGGCGAGGAGCTCCGGGAA
GACGCAGCCGAGCGCGCCCAGCATCGCCCACCGGGAGTGGATCACCTCCAGCTCCCGGTTCTTGGCGAACGTCTCCGGGTCGGCGGAGAGCCCCGCGGTG
TCCCACCCGTAGTCGCCCGGGAACTCGCCGGTGAGGTAGCTCGGCGGCTCGCCGGAGAGCGGGCCGAGGTAGAGGACGCGGTCGGCGCCGTACCACGGGC
TCCCCGACGACGCCGCCGGCTTGGGCTTCGCGGCGGTCTTGCGCATGGTGATCCGCGCCTCGCCGAAGAGCGCGGAGGAGAGCGCCATGGTGGCCGCGGC
CATTGATGCAGTGAGCTGTGAGAGCTGAGAGAGATGGCGATGAGCGAGCGAGTGTGAGTTGGGAGTTGGAGATGGCGC