CANTATAdb - search

Detailed information on CNT30251349

BLAST search results

BLAST vs Swiss-Prot:
sp|P12329|CB21_MAIZE, E-value = 2e-138

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30696035	Avena sativa	Oryza sativa	58.47	57.55	89.1	587	forward
CNT30641294	Avena sativa	Nymphaea colorata	52.09	51.63	87.38	523	forward
CNT30393694	Avena sativa	Triticum turgidum	64.04	66.43	94.25	643	forward
CNT30555055	Avena sativa	Oryza glaberrima	58.17	54.17	89.55	584	forward
CNT30665140	Avena sativa	Triticum dicoccoides	65.34	69.42	93.9	656	forward
CNT30472898	Avena sativa	Saccharum spontaneum	52.39	53.84	92.4	526	forward
CNT30596901	Avena sativa	Oryza meridionalis	52.89	54.46	90.96	531	forward
CNT30103289	Avena sativa	Oryza rufipogon	58.17	53.33	89.55	584	forward

Expression of CNT30251349

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MVMRPSPKGEALEAFMGVPAIAGEESAMVEAAICSL*

>peptide 2 (29 aa)
MAQREWMTSSSRFLAKVSGSAERPAVSQP*

Sequence

>CNT30251349
TTCGGTGAAAACTTAAACTGCTTGGACTTTCAGAAAGTTCAGAGATCTTAAGTAGTATTGACATTCAGAGAAACCAATAGTTAAGCAGAAGAAGAAAGAT
TCCTTGATGAATAACCATAAACACCATGATCTTTAGTGTACAACACCAACTCCTCATCTGGACTCGCCTTAACATGATCCATCAGTGACGACACACATGC
AGCAGCAGCATCATTCAGCAATGAAGTGGTCGGCCAAGCGCGCGCACGCAGCACACGCTAGAGGTTGAGCGAACTAAGCTCTTACTTGCCGGGGACGAAG
TTGGTGGCGAAGGCCCAGGCGTTGTTGTTGACGGGGTCGGCGAGGCCGAGGGGGTCGAAGCTGCCTCCGGGGTAGAGCGGGTCGACGATCTCACCGAGCG
GGCCGCCGGCAACGCGGTATCCCTCGACGGCGCCCATGAGCACGACTTGGCAGGCCCAGATGGCGAGGATGCTCTGGGCGTGGACGAGGCTGGGGTTGCC
GAGGTAGTCGAGGCCGCCCTCGCTGAAGATCTGGGAGCCGGCCTTGAACCAGACGGCCTCGCCGAACTTGACGCCGTTGCGGGCGAGCAGCTCGGGGAAG
ACGCAGCCGAGGGCGCCGAGCATGGCCCAGCGGGAGTGGATGACCTCGAGCTCGCGGTTCTTGGCGAAGGTCTCGGGGTCGGCGGAGAGGCCCGCGGTGT
CCCAGCCGTAGTCGCCGGGGAACTCGCCGGTGAGGTAGCTAGGGGGCTCGCCGGAGAGCGGGCCGAGGTAGAGCACGCGGTCGGAGCCGTACCAGGGGCT
GCCGGACGCGGACACCTTGGGCTTGCCGGCCGTCTTGCGCATGGTGATGCGGCCCTCGCCGAAGGGGGAGGCCCTGGAGGCCTTCATGGGGGTGCCGGCC
ATCGCCGGGGAGGAGAGCGCCATGGTGGAGGCTGCCATTTGCTCGCTCTGATCGAGGTGAGGTGTGCTTCGAGTGAGCTCGGGTGGTAGGAGTTGCTGGT
GTCT