Detailed information on CNT30655387


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT007280, E-value = 4e-177

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30201983Rosa chinensisPisum sativum31.3315.694.39214reverse complement
CNT3091836Rosa chinensisSolanum tuberosum98.8323.792.74675reverse complement
CNT30224045Rosa chinensisHordeum vulgare39.8273.1297.43272reverse complement
CNT30439245Rosa chinensisAegilops tauschii13.9134.6786.3295reverse complement
CNT30463939Rosa chinensisSaccharum spontaneum55.3429.3995.5378reverse complement
CNT30689350Rosa chinensisTriticum urartu55.3424.1596.03378reverse complement
CNT30103440Rosa chinensisOryza rufipogon55.3423.3395.77378reverse complement
CNT30556528Rosa chinensisPanicum hallii55.3436.5695.5378reverse complement

Expression of CNT30655387

Peptides detected in this lncRNA

>peptide 1 (42 aa)
GRSIYIFPHSLGAVSRSPTCEIRGTSSYGDSPWSNSAPYDER*

>peptide 2 (78 aa)
GDRSTSFPIAWGLCLDLLRAKSEGLVPMGIPLGLIPRLMTKGESAWRKVKIEGSREKFPSGVFRRCNLGNEKGAKYFN*

Sequence

>CNT30655387
GGGCGATCGATCTACATCTTTCCCCATAGCCTGGGGGCTGTGTCTCGATCTCCTACGTGCGAAATCCGAGGGACTAGTTCCTATGGGGATTCCCCTTGGT
CTAATTCCGCGCCTTATGACGAAAGGTGAGTCGGCGTGGCGTAAAGTGAAGATTGAGGGAAGTAGAGAAAAATTCCCTTCTGGGGTATTCCGAAGGTGTA
ACCTAGGCAACGAAAAAGGGGCCAAATACTTCAACTAGAGGAGCGACCCGTTGGTTCACCAAACCCCGACCCAGCGTCACACGTTCTCCAGGTCCGAAGG
GATCCAGTGCCCAACTACCGACTCCTCCCGGAATTGCGTTATCGGAGCCGAGCCAGGAATGGCCGTTAGTGGACACCCACCACTTTTCACCGGTTAGAGA
GGCCCTCTTTAATACATTAAGAAAAGATGTTCACAGGGGCCAGAAAGACTCGGTCATAGGAACTTAGACCACCTACGCGCTGGTAAACGAAAACCACCTC
GACCGAATCAGAGTAAACAACAATGTCGAATCAGGCCGCCCCTTGCCTTGAAAGAATTCACACGCGGCCACCGGCTTTCCCAAAATAAGGGGAGATCCGC
TGCTTACTGCTCACGAAAACATCCCTATAGTAAAGTCGTCCGCGTATCTTTCTGATCTCCTTTCCTTACCGCAAGCACTAAGC