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Detailed information on CNT30463939


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30373827Saccharum spontaneumArabidopsis thaliana30.8738.7793.95397forward
CNT30201983Saccharum spontaneumPisum sativum35.1532.9492.92452forward
CNT30708112Saccharum spontaneumGlycine max13.35790.06171forward
CNT3091836Saccharum spontaneumSolanum tuberosum35.1515.8794.03452forward
CNT30224045Saccharum spontaneumHordeum vulgare29100.2798.66373forward
CNT30439245Saccharum spontaneumAegilops tauschii21.3110094.89274forward
CNT30664613Saccharum spontaneumTriticum dicoccoides17.4258.0396.88224forward
CNT30655387Saccharum spontaneumRosa chinensis29.3955.3495.5378reverse complement
CNT30689350Saccharum spontaneumTriticum urartu80.7966.3997.691039forward
CNT30483162Saccharum spontaneumChara braunii16.5697.7182.63213forward
CNT30418817Saccharum spontaneumPapaver somniferum8.4851.4295.41109reverse complement
CNT30103440Saccharum spontaneumOryza rufipogon87.7969.6997.611129forward
CNT30556528Saccharum spontaneumPanicum hallii59.1873.698.42761forward

Expression of CNT30463939

Peptides detected in this lncRNA

>peptide 1 (70 aa)
MKPLFFERIKTHQNGTAVLNNRRIWQKYVKLSLLKKLFQNKWAIVRRGAPAASRSKVIRYRRKARPEPHVQ

>peptide 2 (33 aa)
MHLRSNILSQLLWKIQTFFLMLRSHKNINFEAQ*

>peptide 3 (40 aa)
AHHPMNERLIRKDREILTFFTSVTTFSHFFFDLFMRSENE*

>peptide 4 (29 aa)
MGKVDRLPKNYNYIEGLYKSIKKFPKIDR*

Sequence

>CNT30463939
CGCACATCATCCAATGAATGAAAGATTAATAAGAAAAGACAGAGAGATATTGACTTTTTTCACATCTGTAACTACATTCTCACATTTCTTTTTTGATCTT
TTTATGCGATCGGAAAACGAATGAGATCAGAAAGATAGGCAGACGACTTGACGATAAGGTCGGATGTTTCCGTGAGCAGTAAGCAGCGGATCTCCCCTTT
TTTTGGGGAAAGCTGGTGGCCCTTTTGGCGTGTTAATTCTTTCGACGGGGCGGCCTTCTTCGTTCGGTAGATCCGGTCGAGGTGGTTTTCGTTTACCAGC
GCGTAGGTGGTTTAAGTTCCTATGACCGAGTCTTTCTGGCCCCTGTGAACATATTTTCTTAATGTATTAAAGAGGGCCTCTCTAACCGGTGAAAAGTGGT
AGGTGTCCACTAACGGCTATTCCTGGCTCGGCTCCGATAACGCAATTCCGGGAGGAGTCGGTAGTTGGGCACTGGATCCCTTCGGATCTGGAGAACGTGT
GACACTGGGTCGGGGTTTGGTGAACCAACAGGTCGCTCCTTTAGTTGAAGTATCGGGCCCCTTTTTCGTTGCCTAGGTTACACCTTCGGAATACCCCAGA
CGGGGATTTCGCTCTATTCCCCCCAATCTTCACTTTACGCCACGCCGACTCTCCGTCGTGGAATTAGACCAAGGGTCGAAGACCCATACCATATGACCCC
GTTCCCGTATCTTATCTTTCGCACATAGGAGATCGAGACACAGCCTTAGGGCTATGGGGAAAGTAGATCGATTGCCCAAGAATTACAACTACATAGAGGG
TCTCTACAAGTCTATAAAGAAGTTTCCAAAAATTGATCGGTAGTAGTCCGGTCGCATCCGAACAATAATATTCCAGAGGGAAATGCACCTAAGATCAAAT
ATTTTGAGCCAGCTTCTATGGAAAATTCAGACTTTCTTTTTGATGCTGCGATCACATAAAAACATAAACTTTGAAGCTCAATAGCTAAATACATGGCAAT
TAAATCATGAGCCGGGATCATTAAGAGCATACTGCAAGTAGGAAGTGGAATTAATACAATGAATTCAAAAGCATGAAACCTCTCTTTTTTGAAAGAATCA
AAACACATCAAAATGGTACAGCCGTACTTAATAATAGAAGGATTTGGCAGAAATATGTAAAATTGTCCCTCCTAAAAAAATTATTCCAGAATAAATGGGC
AATAGTTAGGAGAGGTGCGCCAGCGGCGAGCAGAAGCAAGGTTATTAGATACCGAAGGAAAGCCCGGCCAGAACCACACGTGCAAG