Detailed information on CNT30224045


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3091836Hordeum vulgareSolanum tuberosum74.199.6993.12276forward
CNT30439245Hordeum vulgareAegilops tauschii37.3750.7399.28139forward
CNT30463939Hordeum vulgareSaccharum spontaneum100.272998.66373forward
CNT30655387Hordeum vulgareRosa chinensis73.1239.8297.43272reverse complement
CNT30689350Hordeum vulgareTriticum urartu93.0122.1199.71346forward
CNT30103440Hordeum vulgareOryza rufipogon100.2723.0299.2373forward
CNT30556528Hordeum vulgarePanicum hallii100.2736.0798.93373forward

Expression of CNT30224045

Nothing found.

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MAIPGSAPITQFREESVVGHWIPSDLENV*

>peptide 2 (49 aa)
SSKQRISPFWGKAGGPFGVLILSTGRPSSFGRSGRGGFRLPARRWSKFL*

Sequence

>CNT30224045
TGAGCAGTAAGCAGCGGATCTCCCCTTTTTGGGGGAAAGCTGGTGGCCCTTTTGGCGTGTTAATTCTTTCGACGGGGCGGCCTTCTTCGTTCGGTAGATC
CGGTCGAGGTGGTTTTCGTTTACCAGCGCGTAGGTGGTCTAAGTTCCTATGACCGAGTCTTTCTGGCCCCTGTGAACATATTTTCTTAATGTATTAAAGA
GGGCCTCTCTAACCGGTGAAAAGTGGTAGGTGTCCACTAATGGCTATTCCTGGCTCGGCTCCGATAACGCAATTCCGGGAGGAGTCGGTAGTTGGGCACT
GGATCCCTTCGGACCTGGAGAACGTGTGACACTGGGTCGGGGTTTGGTGAACCAACAGGTCGCTCCTTTAGT