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Detailed information on CNT30103440


BLAST search results

BLAST vs Swiss-Prot:
sp|P80264|NDUS2_SOLTU, E-value = 2e-10

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30373827Oryza rufipogonArabidopsis thaliana33.2152.5496.1538forward
CNT30201983Oryza rufipogonPisum sativum25.1229.6694.84407forward
CNT30708145Oryza rufipogonGlycine max17.5910090.88285forward
CNT3091836Oryza rufipogonSolanum tuberosum25.1214.2996.07407forward
CNT30224045Oryza rufipogonHordeum vulgare23.02100.2799.2373forward
CNT30439245Oryza rufipogonAegilops tauschii12.2272.2697.98198forward
CNT30666432Oryza rufipogonTriticum dicoccoides20.2590.6196.65328forward
CNT30463939Oryza rufipogonSaccharum spontaneum69.6987.7997.611129forward
CNT30655387Oryza rufipogonRosa chinensis23.3355.3495.77378reverse complement
CNT30689350Oryza rufipogonTriticum urartu76.5479.2399.111240forward
CNT30596463Oryza rufipogonOryza meridionalis7.2228.8999.15117forward
CNT30371428Oryza rufipogonOryza glumipatula10.82898.86175forward
CNT30483162Oryza rufipogonChara braunii11.4885.3281.72186forward
CNT30418817Oryza rufipogonPapaver somniferum6.7351.4294.5109reverse complement
CNT30556528Oryza rufipogonPanicum hallii41.6765.2898.37675forward

Expression of CNT30103440

Peptides detected in this lncRNA

>peptide 1 (66 aa)
MNSEASNLSFSKESKHIEMVPAVLNNRRIWQKYVKLSLLKKLFQNKWAIVRRGAPAASRSKARNTK*

>peptide 2 (43 aa)
MSKMKVALMIKISGETAKKRLNMWFRVSITSSAFIFNTDRETP*

>peptide 3 (33 aa)
MHLRSNILSRLPWKIQTFFLMLRSHKNINFEAQ*

>peptide 4 (66 aa)
MSSRMLRSGIRSEILDLPVPSRHGKEIRKILLFLFSSAMSKIFTYLPLLGCQTFQFEFKIPPPLSN*

Sequence

>CNT30103440
ATCTACAAACGAATGAGATCAGAAAGATAGGCGGACGACTTGACCATAAGGTCGGATGTTTCCGTGAGCAGTAAGCTGCGGATCTCCCCTTTTTTGGGGG
AAAGCTGGTGGCCCTTTTGGCGTGTTAATTCTTTCGACGGGGCGGCCTTCTTCGTTCGGTAGATCCGGTCGAGGTGGTTTTCGTTTACCAGCGCGTAGGT
GGTCTAAGTTCCTATGACCGAGTCTTTCTGGCCCCTGTGAACATATTTTCTTAATGTATTAAAGAGGGCCTCTCTAACCGGTGAAAAGTGGTAGGTGTCC
ACTAACGGCTATTCCTGGCTCGGCTCCGATAACGCAATTCCGGGAGGAGTCGGTAGTTGGGCACTGGATCCCTTCGGACCTGGAGAACGTGTGACACTGG
GTCGGGGTTTGGTGAACCAACAGGTCGCTCCTTTAGTTGAAGTATCGGGCCCCTTTTTCGTTGCCTAGGTTACACCTTCGGAATACCCCAGACGGGGATT
GAGCTCTATTCCCCCCAATCTTCACTTTACGCCACGCCGACTCTCCGTCGTGGAATTAGACCAAGGGTCGAAGACCCATACCATAGGACCCCGTCCCCCG
TATCTTATCTTTCGCGCGTAGGAGATCGAGACACAGCCTTAGGGCTATGGGGAAAGTAGATCGATTGCCCTAGAATTACAACTACATAGAGGGTCTCTAC
AAGTCTATAAAGAAGTTTAAAAAAATTGATCGGTAGTAGTCCGGTCGCACCCGAACAATAATATTCCAGAGGGAAATGCACCTAAGATCAAATATTTTGA
GCCGGCTTCCGTGGAAAATTCAGACTTTCTTTTTGATGCTGCGATCACATAAAAACATAAACTTTGAAGCTCAATAGCTAAATACATGGCAATTAAATCA
TGAGCCGGGATCATTAAGAGCATACTGCGAGTAGGAAGTGGAATTAATACAATGAATTCAGAAGCATCAAACCTCTCTTTTTCGAAAGAATCGAAACACA
TCGAAATGGTACCAGCCGTACTTAATAATAGAAGGATTTGGCAGAAATATGTAAAATTGTCCCTCCTAAAAAAATTATTCCAGAATAAATGGGCAATAGT
TAGGAGAGGTGCGCCAGCGGCGAGCAGAAGCAAGGCGCGCAACACTAAGTAATCCAAGCCAACCCACATTACTAACTAACGGTGGATAATCATCTTTCTT
AGAGGTACTAAATACAACTCCATGAATGAGCAAAATGAAGGTTGCGTTAATGATAAAGATCTCTGGGGAAACCGCTAAAAAAAGATTGAACATGTGGTTC
CGAGTTTCGATAACTTCTTCAGCTTTCATTTTCAATACTGATCGTGAAACACCATGAGCAGCAGGATGTTGAGGTCCGGAATTCGAAGTGAAATTCTTGA
TTTGCCCGTTCCTAGTCGTCATGGGAAAGAAATAAGAAAGATATTATTATTCCTTTTCTCTTCAGCTATGTCGAAGATATTTACTTATTTGCCGCTCCTT
GGCTGTCAAACCTTCCAATTCGAATTTAAAATTCCACCCCCTCTCTCGAACTGAGCTATTCCGATGATAAATCACTAGGACGACATAAGACAGACACATA
ACCTACGTACCACAATTTCT