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Detailed information on CNT3091836


BLAST search results

BLAST vs Swiss-Prot:
sp|P93401|NU2M_OENBE, E-value = 3e-56

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30373827Solanum tuberosumArabidopsis thaliana14.0138.9697.49399forward
CNT30201983Solanum tuberosumPisum sativum20.1541.8496.34574forward
CNT30708145Solanum tuberosumGlycine max5.2752.6395.33150forward
CNT30224045Solanum tuberosumHordeum vulgare9.6974.1993.12276forward
CNT30439245Solanum tuberosumAegilops tauschii3.4836.1389.999forward
CNT30664613Solanum tuberosumTriticum dicoccoides7.7657.2595.02221forward
CNT30463939Solanum tuberosumSaccharum spontaneum15.834.9994450forward
CNT30655387Solanum tuberosumRosa chinensis23.798.8392.74675reverse complement
CNT30689350Solanum tuberosumTriticum urartu14.2225.8895.8405forward
CNT30483162Solanum tuberosumChara braunii6.7187.6182.2191forward
CNT30418817Solanum tuberosumPapaver somniferum3.4846.792.9399reverse complement
CNT30103440Solanum tuberosumOryza rufipogon14.222596.05405forward
CNT30556528Solanum tuberosumPanicum hallii13.4136.9492.67382forward

Expression of CNT3091836

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MARSTIWTDKCRLWQKGRGIRNRWSPDAR*

>peptide 2 (35 aa)
MSEPFRNWLRMGATIPARIQPGSIDHVPFPTVVPCL

>peptide 3 (41 aa)
VILPIVRDILHFVIEGFQTSLRRSVPCFFPPLFPFRLFLPM*

>peptide 4 (43 aa)
MRRIFETTFEPSHGFRPNYRKNRMEGQKRILCADVKALSIERL*

>peptide 5 (69 aa)
MILRSRGSTGPSIAASLPLAPGLVSLRSISSSSSSSRGRRSVVEGNELETQREIRSKTRQREGGTQVQH*

>peptide 6 (84 aa)
MDSKASNLSCSKELKHIEMVPAVLNNRRIWQKYVKLSLLKRLFQNKWAIVRRGAPAASRSKVIRYLRKARPEPHVQVSLHVARP*

>peptide 7 (94 aa)
MGPQRSRWRCPKRDGPGQIGEFAVEIGFRFVNRMSHLATPDLSPGTTAIQRDSKCQGSKTSGTWNSTLRLFVPLSFDDQGTMATIYLSGDAKNI*

Sequence

>CNT3091836
GTAATCCTACCCATTGTGAGAGACATCCTCCACTTTGTAATTGAAGGGTTCCAAACCTCGCTTCGTCGCTCAGTCCCTTGCTTCTTTCCTCCTCTTTTTC
CTTTCCGGCTCTTTCTACCAATGTGATTTAATTCCAGGTGCATATTTCAATTACGTCTTCCATGATTCTTAGATCCAGAGGTAGCACCGGTCCATCAATA
GCAGCATCCCTTCCTCTCGCACCCGGTCTAGTATCTCTTAGGTCGATATCCAGTAGCTCCAGTAGCAGCAGAGGGAGAAGATCGGTAGTAGAAGGTAACG
AACTAGAGACTCAGAGAGAGATCAGAAGCAAAACTCGACAAAGAGAAGGCGGAACCCAGGTGCAACACTAAACTAGGCGTTACCTGGGGCCGCACGACTC
AGGCAGACTCTCTACCCGTGCGCGTGCCTATTTTTCTTTAGGAGGTATCAGAGCGGAGTTTTGGGTAAAAACCTATCGATTTCTGCTAATTCTCTTCTTG
TTGTACCATGTACATGACGATAGCAGTGGAGTGTTGTCAGCGGCGACTGTTGTTAAGGAAACACTCAAGGATCGAGTGACCCAACTTGATGGCAAGGTCG
ACCATTTGGACGGACAAGTGTAGACTATGGCAAAAAGGCAGGGGAATCCGGAATCGTTGGTCACCAGACGCTCGCTAATGAGTACCGCGTCTTCCTAGTG
AAGTAGAACCGTCTTCATGGGGCCTCAACGATCCCGGTGGCGATGTCCAAAGCGTGACGGACCGGGTCAAATTGGGGAGTTTGCTGTGGAGATAGGTTTC
CGGTTCGTGAACCGAATGTCTCACCTGGCGACTCCAGACTTGAGTCCCGGAACCACAGCCATTCAACGGGATTCGAAATGCCAAGGCTCGAAGACCTCTG
GGACATGGAACAGTACTTTAAGGCTGTTCGTGCCCCTTTCTTTTGACGACCAAGGCACAATGGCAACAATCTATCTCTCTGGGGATGCGAAGAATATTTG
AAACGACTTTCGAACCATCACACGGATTCCGACCCAACTACCGTAAGAACAGAATGGAAGGGCAAAAAAGGATTCTATGCGCAGACGTGAAAGCTCTATC
AATAGAAAGATTATAGCTTATTATTTATATTTTTAGAGAGGAATGATTCCCTCGTCTGAGAACCGCCATTCACGTACTATTCCTCCCCACTAAAAAGAGC
GATTGAGAATCTCAAGAACCTAAACAAAAATGCAGAAGTGAGCATACCCTAAGGCTCTCCTCTCTCCCCCTTTTTTAGCCAACACCATCAACCCCATTTT
TCACTGGGTCAAAAGCCAAAAATATGATGAATAGAAGGAAAGGAGATCAGAAAGATAGGCGAACGACTTGACTATAGTATAGGTCGGATGTTTCCGTGAG
CAGTAAGCAGCAGATCTCCCCTTATTTTGGGAAAGCTGGTGGCCGCGTGTGAATTCTTTAAAGGCAAAGGGCGGCCTGATTCGACATTGTTGTTTACTCT
GATCCGGTCGAGGTGGTTTTCGTTTACCAGCACCTAGGTGTTCTAAATTCCTATGACCGAGTCATTCTGGCCCCTGTGAATATCTTTTCTTAATGTATTA
AAGAGGGCCTCTCTAACCGGTGAAAAGTGGTGGGTGTCCAGTAACGACCATTCCTGGCTCGGCTCCGATAACGCAATTCCGGGAGGAGTCGGTAGTTGGG
CACTGGATCCCTTCGAAACTGGAGAATGTGTGACGCTGGGTCAGGGTTTGGTGAACCAACGGGTCGCTCCTCTAGTTGAAGTATCGGGCCTCTTTTTCGT
TGCCTAGGTTACACCTTCGGAATACCCCATAAGGGAATTTTTCTACTCCCCCCAATCTTCACTTTACGCCACGCCGACTCCCCTTTCGTCGTAAGGCGTG
GAATTAGACCAAGGGGAATCTCTATAGGAACTAGTCCCTTATATTTCACACATAGGAGATCGAGACACAGCCCCAGGGCTATGGGGAAAGATGTAGATCG
ATCGCCCTAGATAGACAACTACATAGAGGGCCTCTACCAGTCTATATATTCTTTGATTTCGTTCCCCCCGTAAGATAAATATTACAACCTATGAGGTCTG
CAAGTTTCACATCTAAGTAATACCCGATCCGATAGTTTACGATATAGATAGATAGATATATATTTATAAAGAACATTCTAAGAAAAGATATTAATAGATA
TCGGTAGTTGTCCGGTCGTACCCAAACAATAATATTCCAGAGGGAAATGCACCTAAGATCAAATATTTCGAGCCGGCTTCCGTAGAAAATTCAGACTTTC
TTTTTGATGCTGCGATCACATAAAAACATAAACTTTGAGGCTCAATAGCTAAATACATGGCAATTGAATCATAAGCCGAGATCATAAAGAGCATACCGCG
AGTAGGAAGTGGAATTAATACAATGGATTCAAAAGCATCAAACCTCTCTTGTTCGAAAGAATTGAAACACATCGAAATGGTACCAGCCGTACTTAATAAT
AGAAGGATTTGGCAGAAATATGTAAAATTGTCCCTCCTAAAAAGATTATTCCAGAATAAATGGGCAATAGTTAGGAGAGGTGCGCCAGCGGCGAGCAGAA
GCAAGGTTATTAGATACCTCAGGAAAGCCCGGCCAGAACCACACGTGCAAGTTTCCCTGCATGTGGCTCGTCCGTGATAACTTCTTCGGATTTGCGTGAA
CTAGCGGACCGATCACTAAGTGGGGATGCTCCCTCCAGCATGAGCGAACCCTTTCGGAACTGGTTAAGAATGGGCGCCACTATCCCAGCCCGGATCCAGC
CAGGTTCTATTGATCATGTCCCCTTCCCAACAGTTGTACCTTGTCTTG