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Detailed information on CNT30556528


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3091836Panicum halliiSolanum tuberosum36.9413.4192.67382forward
CNT30224045Panicum halliiHordeum vulgare36.07100.2798.93373forward
CNT30439245Panicum halliiAegilops tauschii26.510094.16274forward
CNT30463939Panicum halliiSaccharum spontaneum73.659.1898.29761forward
CNT30655387Panicum halliiRosa chinensis36.5655.3495.5378reverse complement
CNT30689350Panicum halliiTriticum urartu56.5837.3898.97585forward
CNT30418817Panicum halliiPapaver somniferum10.5451.4295.41109reverse complement
CNT30103440Panicum halliiOryza rufipogon65.2841.6798.37675forward

Expression of CNT30556528

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MIQRKDREILTFFTSVTTFSHYLFFYLFMRSENE*

>peptide 2 (38 aa)
SGVMISTINSQPLLLLPESPASDESFTLAHILENLPMS*

>peptide 3 (37 aa)
MGFSVFLTCFFSLVKCLPIFRGEWSIGFLLLKNFVNE*

>peptide 4 (40 aa)
MNDPEKRQRDIDFFHICNYILTLFIFLSFYAIGKRMRSER*

Sequence

>CNT30556528
CTCTGGTGTGATGATTTCAACGATCAATTCCCAACCCCTCCTATTACTCCCTGAAAGCCCAGCAAGTGATGAATCCTTTACCCTTGCTCATATTCTGGAA
AATCTTCCCATGTCATAAACCTTCCATTCAGTATAGGTAAACCATTTAGGGAGAATGGGTTTTTCGGTCTTTCTCACGTGTTTTTTTTCGCTCGTCAAAT
GTTTACCTATCTTCCGCGGAGAATGGTCGATCGGTTTTCTTCTTTTAAAGAACTTTGTAAATGAATGATCCAGAGAAAAGACAGAGAGATATTGACTTTT
TTCACATCTGTAACTACATTCTCACATTATTTATTTTTTTATCTTTTTATGCGATCGGAAAACGAATGAGATCAGAAAGATAGGCGGACGACTTGACGAT
AAGGTCGGATGTTTCCGTGAGCAGTAAGCAGCGGATCTCCCCTTTTTTTGGGGAAAGCTGGTGGCCCTTTTGGCGTGTTAATTCTTTCGACGGGGCGGCC
TTCTTCGTTCGGTAGATCCGGTCGAGGTGGTTTTCGTTTACCAGCGCGTAGGTGGTTTAAGTTCCTATGACCGAGTCTTTCTGGCCCCTGTGAACATATT
TTCTTAATGTATTAAAGAGGGCCTCTCTAACCGGTGAAAAGTGGTAGGTGTCCACTAACGGCTATTCCTGGCTCGGCTCCGATAACGCAATTCCGGGAGG
AGTCGGTAGTTGGGCACTGGATCCCTTCGGACCTGGAGAACGTGTGACACTGGGTCGGGGTTTGGTGAACCAACAGGTCGCTCCTTTAGTTTAAGTATCG
GGCCCCTTTTTCGTTGCCTAGGTTACACCTTCGGAATACCCCAGACGGGGATTTCGCTCTATTCCCCCCAATCTTCACTTTACGCCACGCCGACTCTCCG
TCGTGGAATTAGACCAAGGGTCGAAGACCCATACCATAGGACCCCGTCTCCCGTATCTTATCTTTCGCACGTAGGAGATCGAGACACTGCCTTAGGGCTA
TGGGGAAAGTAGATCGATTGCCCAAGAATTACAA