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Detailed information on CNT30645933


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9MU26|ATPB_NYMOD, E-value = 6e-57

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30197557Cannabis sativaPisum sativum101.3861.7487.04957forward
CNT3088631Cannabis sativaVigna radiata20.0227.4384.66189reverse complement
CNT3082983Cannabis sativaBrassica juncea92.5836.486.96874forward
CNT3017912Cannabis sativaZea mays73.8397.3581.06697forward
CNT30154378Cannabis sativaPrunus persica47.7899.1286.7451forward
CNT30416813Cannabis sativaPapaver somniferum100.7442.6185.38951forward
CNT3058692Cannabis sativaAmborella trichopoda18.6445.689.77176forward
CNT30577541Cannabis sativaOryza barthii19.622.784.32185forward
CNT30116966Cannabis sativaOryza nivara96.1925.3681.5908forward
CNT30726985Cannabis sativaLupinus angustifolius40.8917.8589.9386forward

Expression of CNT30645933

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MSLPFSASFTKTVISLFPILAKPPIRAIVNHWS*

>peptide 2 (33 aa)
MPLAANPLDSTVVASKCANVGGRIWISQIVHGT*

>peptide 3 (30 aa)
PARLRARFASIVCLLPSALLKLTSAISRVC*

Sequence

>CNT30645933
CCCAGCTCGTCTGAGAGCTAGATTTGCCTCAATTGTTTGTCTCTTGCCTTCAGCTTTACTCAAGTTAACTTCCGCTATTTCAAGAGTTTGCTGAGCTTCT
TGTGGATCAATGTCACTACCCTTCTCCGCATCATTTACTAAAACAGTGATCTCATTATTCCCTATTCTAGCAAAACCACCCATCAGAGCCATCGTTAACC
ATTGGTCTTGAAGGCGTATTCTCAAAATACCGATATCTACAAATGTGGCAATAGGCTGTGATTTGGTAATATGCCAATTTGTCCACTATTAGTCGATAAA
ATTATTTCTTTCACTTGAATCCCAAACAATTCGATTTGGGGTCAAGATTACACAAAGATTTAAGGTCATTTCTTCAATTTGTTCTCCATTTCTAAGTTAA
GTAGCCTTCAGATAGCTTCATCAATGTTACCGACCAAATAAAAGCACATTCGGGAAGACCATCTAATTCTCGTGAAAGAATCAATTTAAACCCTTTAATT
GTTTCGCTAGACCAACATATTTCCCTGGGAACACAGTAAATACTACGCTATGAAAAAGGTTGTGACAAGAAACGCTCAATTTTTCGTGCTCTTGCTACTT
GGTTAGCGGTCTTCTTCTGATAATTCGTCCAACCCAAGAATAGCTATAATGTCCCGAAGTTCTTTGTAACGTTGTAAAGTTTGTTTAACTCTTTCTTGAG
CTTCATAATGTTCTTCACCAACAATCAGAGGTTGGAGCATAGTTGACGTTGAATCTAAAGGATCTATCTTTGGATAGATGCCTTTGGCGGCCAATCCTCT
TGATAGTACGGTAGTCGCATCTAAATGTGCAAATGTCGGTGGTAGGATTTGGATCAGTCAAATCGTCCATGGTACATAAACTACTTGAATAGAAGTTATG
GACCCCTCTTTGGTAGAAGTAATTCTTTCTTGTAAAGAACCCAT