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Detailed information on CNT3017912


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6L392|ATPB_SACHY, E-value = 2e-71

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3088631Zea maysVigna radiata29.7530.9182.63213reverse complement
CNT30154378Zea maysPrunus persica58.892.5385.04421forward
CNT30645933Zea maysCannabis sativa97.3573.8381.06697forward
CNT30577541Zea maysOryza barthii82.472.3991.69590forward
CNT30116966Zea maysOryza nivara10019.9996.37716forward

Expression of CNT3017912

Peptides detected in this lncRNA

>peptide 1 (35 aa)
QFFRTFSFTQVSFGYFKCLLSFFWINVTTQFCIIS*

>peptide 2 (82 aa)
MSLPSSASFPKMMISLLTILAKPLHRTAVNHWSFRRRILKGPISTAVLMGAWFGNTPIWPLLVDKMISFTSQSQIIRLGVST*

Sequence

>CNT3017912
CAATTCTTTCGTACCTTCAGCTTTACTCAAGTTAGCTTCGGCTATTTCAAGTGCCTGTTGAGCTTCTTCTGGATCAATGTCACTACCCAGTTCTGCATCA
TTTCCTAAAATGATGATCTCATTATTAACTATTCTTGCAAAACCACTCCACAGAACCGCCGTTAACCATTGGTCGTTCAGGAGGCGTATTCTCAAAGGAC
CCATATCTACAGCTGTGTTAATGGGGGCGTGGTTTGGTAATACACCAATTTGGCCACTATTAGTAGATAAAATGATTTCTTTCACTTCACAATCCCAAAT
AATTCGTTTAGGAGTCAGTACATAAAGATTTAATTTCATTTCTTCAATTTGCTCTCCTCTTCTAAGTTTATAGCTTTCGTGCTAGCTTCATCGATGTTCC
CCACTAAATAAAAAGCCTGTTCGGGTAGGCCGTCTAATTCTCCGGAAAGGATTAGTTGAAATCCCCTAATTGTTTCTGCAAGACCAACATACTTTCCTGG
AGAACCGGTAAAAACTTCTGCCACAAAGAACGGTTGTGATAAGAACCGCTCGATTTTTCGTGCTCTTGCTACAGTTAAACGATCCTCCTCCGATAATTCA
TCCAATCCAAGAATTGCGATAATGTCCTGAAGTTCTTTGTAACGTTGTAAAGTTTCCTTAACTCTTTGCGCAGTTTCATAATGTTCGTTGCCAACAATCC
GAGGCTGTAACATAGT