Detailed information on CNT30577541


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6ENG8|ATPE_ORYNI, E-value = 7e-50

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30197557Oryza barthiiPisum sativum34.4818.1383.27281forward
CNT3088631Oryza barthiiVigna radiata24.9129.4682.27203reverse complement
CNT3082983Oryza barthiiBrassica juncea35.4612.0483.74289forward
CNT3017912Oryza barthiiZea mays72.3982.491.69590forward
CNT30154378Oryza barthiiPrunus persica36.4465.2783.84297forward
CNT30416813Oryza barthiiPapaver somniferum40.1214.6584.71327forward
CNT30645933Oryza barthiiCannabis sativa22.719.684.32185forward
CNT30116966Oryza barthiiOryza nivara82.8218.8595.11675forward
CNT30726985Oryza barthiiLupinus angustifolius23.688.9285.49193forward

Expression of CNT30577541

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MSLPSSTSFPKMMISLLTFWQNCSTEPPLTIDH*

>peptide 2 (44 aa)
LHLTHIIESKMRFKLQKNYRLQVMVVLYLEYRLSTKLLGCLQFF*

Sequence

>CNT30577541
GTTGCATCTAACTCATATTATTGAAAGTAAAATGCGGTTCAAGTTGCAAAAGAACTATAGGTTACAAGTCATGGTAGTCTTGTATTTGGAGTATAGGTTA
TCAACTAAACTGTTGGGTTGTCTTCAATTTTTTTAGATAATGTGGGTTGTCTTCAATTAGACGGGGGAATCCAATTAACAGCCTCGACTCGTATCCTAGC
TCGTCTGAGAGCTACCTTCGCTTCAACCAATTCTTTCGTACCCTCAGCTCTACTCACGTTAGCTTCGGCTATTTCAAGTGCCTGTTGAGCTTCTTCCTGA
TCAATGTCACTACCCAGTTCCACATCATTCCCTAAAATGATGATCTCATTATTAACTTTCTGGCAAAACTGCTCCACAGAACCGCCGTTAACCATTGATC
ATTGAGGAGGCGATTCTCAAGGGACCCATATCTACAGCTGTGTTAATTGGGGGGGGGGGGGGGGTATGGTTTGGTAATATGGCAATTTGGCCACTACTAG
TAGATAAAATGATTTCTTTCACTTCACAATCCCAAATAATTCGCTTAGGAGTCAGTACATAAAGATTTAATTTCATTTCTTCAATTTGTTCTCCTCTTCT
AAGTTTATAGCTTTCGTGCTAGCTTCATCGATGTTACCCACCAAATAAAAAGCCTGTTCGGGTAGGCCGTCTAATTCTCCGGAAAGGATTAGTTGAAATC
CCATAATAGTTTCTGCAAGACCAACATACTTTCCCGGAGAACCAGTAAAAACTTCTGCCACAAAAAAACGGTTGTGATAAAGAAGCGCTCAATTTTTCGT
GTTCTTGCTACAGTT