CANTATAdb - search

Detailed information on CNT30540970

BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LI74|CHUP1_ARATH, E-value = 1e-85

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30612723	Brassica napus	Arabis alpina	99.42	37.32	83.02	683	forward
CNT30114813	Brassica napus	Eutrema salsugineum	98.84	82	82.92	679	forward

Expression of CNT30540970

Peptides detected in this lncRNA

>peptide 1 (45 aa)
LTAKRNVDRFSISPIILLLASDELPVPGEIKDGEPSFFASRFIND*

>peptide 2 (65 aa)
MSYQFLERSKTVNHLSSLHVSSTTDKTQQAQELCELYSRFPLLFQELQEEAVAAEAVDHHQAKEV*

>peptide 3 (46 aa)
MLNMLLPLNRKLMPIFIRRILLVQNIINRLRHHLKRRRNVIQRLTR*

Sequence

>CNT30540970
CTTACTGCTAAGAGGAACGTTGATCGGTTCTCGATCTCCCCAATCATATTGCTCCTAGCTTCAGATGAGCTACCAGTTCCTGGAGAGATCAAAGACGGTG
AACCATCTTTCTTCGCTTCACGTTTCATCAACGACTGATAAAACTCAACAAGCTCAGGAGCTCTGTGAACTTTACTCCCGCTTCCCGCTCCTCTTCCAAG
AGCTCCAGGAGGAGGCGGTGGCGGCGGAGGCGGTGGACCACCACCAGGCAAAGGAGGTCTAGGGGAAGGCACATTAGTGCTTTTACCACCTCCAGCTGAT
CTTGGAGGCGGGCGAGGCACTCTAGGTGGTCGTTTCTCAATATCCACAAGCTTCATTTTCGCCACGGCTTGCGCGTTTTCGCTAGCTTTACCCTCGTTGT
TGCCGTCACTAGACTGATCACTTGCGGTAACCGTCCTGGTCAAGGAGGGAACCGAAACTGGCTTCTCCTTGAGCTGAGCAAGTTTAGGAGGCAAAGCCAC
ATTACCTCCAAACCTCTCAGCTCTCGCTTGATCTGCCTTATGCTTAATATGCTTCTCCCTCTCAACCGCAAGCTTATGCCTATCTTTATACGCAGGATAC
TTCTCGTCCAGAACATTATCAACCGACTTAGACATCACCTGAAACGACGCCGCAACGTTATTCAAAGGCTCACCCGGTGAAGAAGCT