« Back to Arabidopsis halleri search


Detailed information on CNT30479034


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LI74|CHUP1_ARATH, E-value = 8e-72

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3061202Arabidopsis halleriArabidopsis lyrata28.3148.41100152forward
CNT30612723Arabidopsis halleriArabis alpina39.4811.5891.51212forward

Expression of CNT30479034

Peptides detected in this lncRNA

>peptide 1 (87 aa)
MNYQFLKRSKKVHLLSSIHVSSMIDKTQQAQELGELCCRLPLLFQVLQEAVVVEEVVVDLHQVREVLLKAKWYFYQLQMILEAGEVL*

>peptide 2 (42 aa)
KRNVDRFSISPIILFLAADELPVPEEIKEGAPSFFDSRFIND*

Sequence

>CNT30479034
CTAAGAGGAATGTTGATCGGTTCTCGATTTCCCCAATCATATTGTTCCTAGCTGCTGATGAATTACCAGTTCCTGAAGAGATCAAAGAAGGTGCACCTTC
TTTCTTCGATTCACGTTTCATCAATGATTGATAAAACTCAACAAGCTCAGGAGCTCGGTGAACTTTGTTGCCGCCTCCCGCTCCTCTTCCAAGTGCTCCA
GGAGGCGGTGGTGGTGGAGGAGGTGGTGGTGGACCTCCACCAGGTAAGGGAGGTCTTGCTGAAGGCAAAGTGGTACTTTTACCAGCTCCAGATGATCTTG
GAGGCGGGCGAGGTACTCTAGGAGGTCGTTTCTCAATGTCTACAAGCTTCATTTTGGTTACGGTTGCAGCGTTTTCGTTGGCTTTACCTTCGTTAGACTC
ATTTGACTCGTTAGACTGATCACCTGTGGCTGTGATCACGGAGGGAACCACAACCCTTTTCTCCTTTAGTTGAGCAAGTTTAGGAGGCAAAGCCACATTA
CCGCCAAATCTCTCTGCTCTCGCTTGATCTGCTTTAT