Detailed information on CNT30309942


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LI74|CHUP1_ARATH, E-value = 5e-80

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30612723Camelina sativaArabis alpina99.3826.0792.66477forward
CNT30569875Camelina sativaVitis vinifera27.2915.9480.92131forward

Expression of CNT30309942

Peptides detected in this lncRNA

>peptide 1 (62 aa)
MKVENSCSLNQYLLGHVLNQHTLALTVLLLLVTWDLGSCLSHEPRFYQLVSGNFLTHTVNTH*

Sequence

>CNT30309942
CCCGGTGATCCTCCATAGAATGATCTTGAAGGTGATGACTGAACGCTCGAATCATCTTTGCTCTTGCCCCATCTTTTGAGTTTCTGTATCAATCCCGGTT
TCTTGCTAAAACTACTAAACCTACTCGTGGAACTATCCATTGAAGCATTCTCGAAATCATCGCTTCCGGGAGATGAAGGTTGAGAATAGTTGCTCTCTAA
ATCAGTATCTCCTTGGCCACGTTCTGAACCAGCATACTCTAGCATTAACCGTTTTGCTTTTGCTTGTGACTTGGGACTTAGGTTCTTGCTTAAGTCACGA
GCCGAGATTTTACCAGCTGGTGTCTGGTAATTTCTTAACTCATACCGTAAACACGCATTGACCCAACGGAGATAAACCAACTCCTCAACTTCACTAAACC
TATTCATCTGAAGCCCTTCCACTTGCTTTAACAAGTCCTCATTGTTATGCTTTAAATTATTAACCTCTTCTCTAACTTTC