Detailed information on CNT30569875


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LI74|CHUP1_ARATH, E-value = 1e-76

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3043744Vitis viniferaPrunus dulcis9.8520.6683.9581forward
CNT30309942Vitis viniferaCamelina sativa15.9427.2980.92131forward
CNT30612723Vitis viniferaArabis alpina22.7510.2279.68187forward

Expression of CNT30569875

Peptides detected in this lncRNA

>peptide 1 (40 aa)
GRWTRRSTRWGWGWRGTWRRRWRRWYSTRRISTWTCRSPS*

>peptide 2 (54 aa)
MATPSPAFLSIKASNGPLGRRLMLVLPGEPPPKDLAGDERTLESSLLLPHFFSF*

>peptide 3 (57 aa)
GGGGRGGPPGGGGGGGAPGGGGGGGGTPLEGLAPGPAGAPPEGLGGGRGTLGALFSM*

>peptide 4 (31 aa)
GAVDEAVHQVGVGVAGHLEEEVEEVVLHSKD*

>peptide 5 (31 aa)
MEALSKSSLPGEDGWEKLLSRSVSPCPRSDPA

Sequence

>CNT30569875
GGGGGCGGTGGACGAGGCGGTCCACCAGGTGGGGGTGGGGGTGGCGGGGCACCTGGAGGAGGAGGTGGAGGAGGTGGTACTCCACTCGAAGGATTAGCAC
CTGGACCTGCAGGAGCCCCTCCTGAAGGTTTAGGAGGTGGGCGTGGCACTCTAGGAGCCCTCTTTTCAATGTGAGCAAGTTTCATCTTGCTCGCCACTTG
AGAATCCTCCATCTTGCTGTCAATGGATTGATCACTTGAATCAGCAGAAACAAGGGGTTTTTCCTTTATCTTTGCTAGTTTTGGAGGCAAAGTGACAGAT
TTGTCTCTCTCTGCTTTGGCCAGTTTATGACGGTCTTTATATGCAGGATACTTTTCATCTAAAACTCCTTCCACTGATTTTGACATCAATTGGAATGATG
CTGCAACATTATTCAGTGAGTCACTAGAAGAAACCCTTGTTCTAATGTGTGACAGATTTGGAGTTTCAGGAGATTCAGGAGCTTCCTGATCAATCTTACC
AAATGTAGTGATGGCCACACCATCACCTGCATTTCTTAGCATTAAGGCTTCTAATGGACCCCTTGGACGTAGGCTTATGCTAGTTCTGCCTGGGGAGCCT
CCCCCAAAGGATCTAGCTGGTGATGAAAGAACACTAGAATCATCTCTACTTTTGCCCCATTTCTTCAGCTTTTGAATTAAGCTAGGTTTCTTACTTAGAC
TACTATATCTACTAGTTGAACTATCTATGGAAGCATTGTCGAAATCCTCACTTCCAGGAGAGGATGGATGGGAAAAGTTGCTTTCAAGATCTGTGTCCCC
TTGCCCACGTTCTGATCCTGCG